Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5c07
(610 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0221 + 1671231-1671349,1671613-1671745,1672011-1672190,167... 196 1e-50
11_01_0220 + 1717861-1717979,1718149-1718281,1718544-1718723,171... 196 1e-50
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926... 182 2e-46
10_08_0506 + 18390892-18391373,18392699-18392798,18393152-183934... 32 0.41
02_03_0065 - 14629676-14629804,14631119-14631247,14631383-146317... 29 2.2
07_03_0551 + 19374405-19374541,19375201-19375435,19375539-193757... 29 3.8
02_02_0401 + 9847398-9847463,9848916-9849019,9849873-9849876,984... 28 6.7
09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,713... 27 8.8
04_04_0438 - 25200419-25200670,25202570-25202917,25203529-252036... 27 8.8
02_01_0635 + 4765200-4766144,4766392-4767006 27 8.8
>12_01_0221 +
1671231-1671349,1671613-1671745,1672011-1672190,
1672632-1672712,1672850-1673013,1673109-1673245,
1673492-1673607,1673725-1673958
Length = 387
Score = 196 bits (478), Expect = 1e-50
Identities = 83/154 (53%), Positives = 115/154 (74%)
Frame = +2
Query: 146 IRIYEVGPRDGLQNESKFVPTDIKVELISKIVAAGIKNVESASFVSPKWVKQMSDSVDVM 325
++I EVGPRDGLQNE VPT +K+ELI K+VA+G+ VE+ SFVSPKWV Q++D+ DV+
Sbjct: 93 VKIVEVGPRDGLQNEKNTVPTSVKIELIHKLVASGLSVVEATSFVSPKWVPQLADAKDVV 152
Query: 326 KNIQRVPGVNYPVLVPNLKGYETAKQCNVEEIAIFPAGSEGFSQKNLNCSVEEGLRRFKQ 505
+ I+ VP V +PVL PNL+G+E A +E+A+F + SE FS+ NLNC+++E L R+
Sbjct: 153 EGIKHVPDVRFPVLTPNLRGFEAAVAAGAKEVAVFASASESFSKSNLNCTIKESLVRYHD 212
Query: 506 VADEAVRDGLRVRGYISCVVGCPYDGPIHPKNIA 607
V A + G+R+RGY+SCVVGCP +G IHP +A
Sbjct: 213 VVTSAKKHGIRIRGYVSCVVGCPVEGTIHPSKVA 246
>11_01_0220 +
1717861-1717979,1718149-1718281,1718544-1718723,
1719046-1719126,1719259-1719422,1719518-1719654,
1719900-1720015,1720134-1720367
Length = 387
Score = 196 bits (477), Expect = 1e-50
Identities = 82/154 (53%), Positives = 115/154 (74%)
Frame = +2
Query: 146 IRIYEVGPRDGLQNESKFVPTDIKVELISKIVAAGIKNVESASFVSPKWVKQMSDSVDVM 325
++I EVGPRDGLQNE VP +K+ELI K+VA+G+ VE+ SFVSPKWV Q++D+ DV+
Sbjct: 93 VKIVEVGPRDGLQNEKSTVPASVKIELIHKLVASGLSVVEATSFVSPKWVPQLADAKDVL 152
Query: 326 KNIQRVPGVNYPVLVPNLKGYETAKQCNVEEIAIFPAGSEGFSQKNLNCSVEEGLRRFKQ 505
+ I+ VP V +PVL PNL+G+E A +E+A+F + SE FS+ NLNC+++E L R++
Sbjct: 153 QGIRHVPDVRFPVLTPNLRGFEAALAAGAKEVAVFASASESFSKSNLNCTIKESLVRYRD 212
Query: 506 VADEAVRDGLRVRGYISCVVGCPYDGPIHPKNIA 607
V A + G+R+RGY+SCVVGCP +G IHP +A
Sbjct: 213 VVTSAKKHGMRIRGYVSCVVGCPVEGTIHPSKVA 246
>01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,
9269645-9269808,9269892-9269972,9270783-9270962,
9271489-9271929,9273234-9273344,9274355-9274463,
9274618-9274643,9274823-9274903,9275013-9275211,
9275374-9275449,9275553-9275769,9276117-9276155,
9276684-9276783,9276962-9277084,9277171-9277895
Length = 1059
Score = 182 bits (443), Expect = 2e-46
Identities = 79/163 (48%), Positives = 114/163 (69%)
Frame = +2
Query: 119 RSLSTVAPEIRIYEVGPRDGLQNESKFVPTDIKVELISKIVAAGIKNVESASFVSPKWVK 298
R + + ++I EVGPRDGLQNE VPT +K+ELI ++ +G+ VE+ SFVSPKWV
Sbjct: 749 RIIHDLPRSVKIVEVGPRDGLQNEKNIVPTHVKIELIQRLATSGLSVVEATSFVSPKWVP 808
Query: 299 QMSDSVDVMKNIQRVPGVNYPVLVPNLKGYETAKQCNVEEIAIFPAGSEGFSQKNLNCSV 478
Q++D+ DVM ++ + GV+ PVL PNLKG+E A +E+A+F + SE FS+ N+NC++
Sbjct: 809 QLADAKDVMDVVRNIEGVSLPVLTPNLKGFEAAVAAGAKEVAVFASASEAFSKSNINCTI 868
Query: 479 EEGLRRFKQVADEAVRDGLRVRGYISCVVGCPYDGPIHPKNIA 607
+E L R+K VA A + +RGY+SCVVGCP +G + P N+A
Sbjct: 869 KESLARYKDVALAAKELKIPMRGYVSCVVGCPVEGYVPPSNVA 911
>10_08_0506 +
18390892-18391373,18392699-18392798,18393152-18393485,
18393756-18393868,18394437-18394565,18394746-18394839,
18394942-18395025,18395265-18395896,18396662-18396951,
18397098-18397242,18397876-18397973,18398075-18398156,
18398607-18398612,18398845-18398928
Length = 890
Score = 31.9 bits (69), Expect = 0.41
Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Frame = +2
Query: 218 VELISKI-VAAGIKNVESASFVSPKWVKQMSDSVDVMKNIQRVPGVNYPVLVPNLKGYET 394
+EL+S + + V S+++ V Q S S DVM G NL +T
Sbjct: 413 IELLSALSILQNSSVVSSSTYPKSSKVSQQSCSADVMGGTSFNDGKRKNSKKKNLLSNQT 472
Query: 395 AKQC-----NVEEIAIFPAGSEGFSQKNLNCS 475
C V I I G SQK NCS
Sbjct: 473 RHSCLSSKSEVSHITISSGSDAGLSQKAFNCS 504
>02_03_0065 -
14629676-14629804,14631119-14631247,14631383-14631736,
14631817-14632063,14632155-14632231,14632574-14632648,
14632721-14632822,14632966-14633084,14633538-14633627,
14634866-14635022,14635085-14635098,14635425-14635548,
14635628-14635678,14635793-14635891,14636962-14637072
Length = 625
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 197 FVPTDIKVELISKIVAAGIKNVESASFVSPKWVKQMS-DSVD 319
F PTD+K +I +V K++ES P WVK D +D
Sbjct: 31 FQPTDVKDPVIRPLVELDTKSLESMLPEVPHWVKNPDFDRID 72
>07_03_0551 +
19374405-19374541,19375201-19375435,19375539-19375700,
19375778-19375819,19375941-19376012,19376291-19376370,
19376962-19377059,19377691-19377738,19377983-19378083,
19378331-19378426,19378599-19378689,19379510-19379706,
19380918-19381004,19381208-19381488,19381653-19381743
Length = 605
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 368 VPNLKGYETAKQCNVEEIAIFPAGSEGFSQKNLNCS-VEEGLRRFKQVADEAVRDGLRV 541
VP+ +T NV+ + +F G G + + C V++ +R F + A+E + G+ V
Sbjct: 171 VPDSTQLQTGDIMNVD-VNVFLNGYHGGASRTFVCGEVDDSIRHFLKAAEECLEKGITV 228
>02_02_0401 +
9847398-9847463,9848916-9849019,9849873-9849876,
9849968-9851230
Length = 478
Score = 27.9 bits (59), Expect = 6.7
Identities = 34/130 (26%), Positives = 52/130 (40%)
Frame = +2
Query: 194 KFVPTDIKVELISKIVAAGIKNVESASFVSPKWVKQMSDSVDVMKNIQRVPGVNYPVLVP 373
K V VEL VA ++++ + +SP+ V +S + VP V ++ P
Sbjct: 363 KLVFLSSPVELKVSAVAESERHLQESKEMSPE-VNIVSPPAVLQGFSPEVPSVCEKIVEP 421
Query: 374 NLKGYETAKQCNVEEIAIFPAGSEGFSQKNLNCSVEEGLRRFKQVADEAVRDGLRVRGYI 553
L + AK E + P C++E+ L + D + DGL I
Sbjct: 422 PLADFNQAKNVCSLETSSDP------------CTLEQHLANVSDLLDMSYIDGLM----I 465
Query: 554 SCVVGCPYDG 583
GCPYDG
Sbjct: 466 IPPSGCPYDG 475
>09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,
7138413-7138538,7138650-7139619,7139641-7139737,
7140026-7140113,7140336-7140396,7140425-7140447,
7140663-7140776,7141193-7141306,7144731-7144825,
7146506-7146824,7147166-7147309,7147463-7147564,
7147868-7147971,7148121-7148247,7148804-7148845,
7148939-7149091,7149326-7149426,7149807-7150227
Length = 1139
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 83 VLNILRSNNFLQRSLSTVAP-EIRIYEVGPRDGLQNESKFVPTDIKVELISKIVAAGIKN 259
VL L S +F+ + T+ ++ E+ G++N + IS + A ++
Sbjct: 1027 VLTNLSSISFVSEHIETLEEIDMEYKELALESGIENWGRVPALGCTSSFISDLADAVVEA 1086
Query: 260 VESASFVSPKWVKQMSDSVDVMKNIQRV 343
+ SAS + K V + +D+M + ++
Sbjct: 1087 LPSASALVTKKVDESDSDMDLMHYLSKM 1114
>04_04_0438 -
25200419-25200670,25202570-25202917,25203529-25203600,
25203996-25204025
Length = 233
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 387 MKQLNNAT*KKLLYFLLVRKDFHKKI*IARW--KKVLEDLNRS 509
MKQL+N FL +R D HK I ++ K+LE +NR+
Sbjct: 125 MKQLDNYKDGDWTVFLQIRDDGHKDWKIVKYWLPKILEKVNRA 167
>02_01_0635 + 4765200-4766144,4766392-4767006
Length = 519
Score = 27.5 bits (58), Expect = 8.8
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = +2
Query: 293 VKQMSDSVDVMKNIQRVPGVNYPVLVPNLKGYETAKQCNVEEIAIFPAGSEGFSQKNLNC 472
V+ D VDV+ IQ+ G+ P+ + +KG + + +F AGSE S L
Sbjct: 282 VEDDEDIVDVLLRIQKEGGLEVPLTMGVIKGV-------IRD--LFGAGSE-TSANTLQW 331
Query: 473 SVEEGLR--RFKQVADEAVRDGLRVRGYIS 556
++ E +R R Q A +RD LR + +S
Sbjct: 332 TMSELVRNPRVMQKAQTELRDCLRGKQSVS 361
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,295,259
Number of Sequences: 37544
Number of extensions: 274352
Number of successful extensions: 727
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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