Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5c07
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-20|AAK73908.1|  318|Caenorhabditis elegans Hypothetical...   176   9e-45
Z72512-3|CAA96665.2|  310|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z81076-10|CAB03059.1|  394|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z34802-6|CAB54282.1|  594|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z34802-5|CAA84337.1|  610|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z68319-1|CAA92699.1|  598|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AY028165-1|AAK19021.1|  598|Caenorhabditis elegans DPL-1 protein.      28   6.0  

>AC025726-20|AAK73908.1|  318|Caenorhabditis elegans Hypothetical
           protein Y71G12B.10 protein.
          Length = 318

 Score =  176 bits (429), Expect = 9e-45
 Identities = 83/165 (50%), Positives = 114/165 (69%), Gaps = 1/165 (0%)
 Frame = +2

Query: 119 RSLSTVAPEIRIYEVGPRDGLQNESKFVPTDIKVELISKIVAAGIKNVESASFVSPKWVK 298
           R+ ST     R+ EVG RDGLQ E KFVPT+IKVELI ++   G + VE+ SFVSPKWV 
Sbjct: 10  RAYSTAINRFRVVEVGARDGLQAEKKFVPTEIKVELIDRLSECGFQTVETTSFVSPKWVP 69

Query: 299 QMSDSVDVMKNIQRVPGVNYPVLVPNLKGYETAKQCN-VEEIAIFPAGSEGFSQKNLNCS 475
           Q++D  +++K  +R  GV+YPVLVPN  G + A     VEEIA+F A S+ FS KN+N +
Sbjct: 70  QLADHNEIVKKHRRFEGVSYPVLVPNAAGLKNALATGVVEEIAVFGAASDAFSLKNVNSN 129

Query: 476 VEEGLRRFKQVADEAVRDGLRVRGYISCVVGCPYDGPIHPKNIAK 610
           VE+ L++  +V   A+ + +RVRGY+S VVGCPY G + P+ +A+
Sbjct: 130 VEDSLKKLMEVTKIALENNIRVRGYVSVVVGCPYQGAVQPEMVAR 174


>Z72512-3|CAA96665.2|  310|Caenorhabditis elegans Hypothetical
           protein R07B5.5 protein.
          Length = 310

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 307 THLFNPFWTDKTCRFYIFYTCSNDFTNEFNFNVCWNKLRFILKAI 173
           T+   P     +C FY++Y  S D+ N F   +C  K+    +A+
Sbjct: 248 TYAVIPGLVSYSCNFYVYYWRSTDYRNAFIKQLCCGKVLTTQEAV 292


>Z81076-10|CAB03059.1|  394|Caenorhabditis elegans Hypothetical
           protein F35C5.9 protein.
          Length = 394

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = -1

Query: 358 VIHSRHSLNIFHNINTVTHLFNPF 287
           V+ +  ++N+++  NT+++LFNPF
Sbjct: 60  VVDNSKNMNLYNVYNTISNLFNPF 83


>Z34802-6|CAB54282.1|  594|Caenorhabditis elegans Hypothetical
           protein M88.6b protein.
          Length = 594

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 143 EIRIYEVGPRDGLQNESKFVPTDIKVELISKIVAAGIKNVE 265
           +IR+ + G  DG++N  K    +  +E+I K    G+ ++E
Sbjct: 186 DIRVLKTGTFDGMKNLKKLTLQNCNLEIIQKGAFRGLNSLE 226


>Z34802-5|CAA84337.1|  610|Caenorhabditis elegans Hypothetical
           protein M88.6a protein.
          Length = 610

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 143 EIRIYEVGPRDGLQNESKFVPTDIKVELISKIVAAGIKNVE 265
           +IR+ + G  DG++N  K    +  +E+I K    G+ ++E
Sbjct: 186 DIRVLKTGTFDGMKNLKKLTLQNCNLEIIQKGAFRGLNSLE 226


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical protein
            C29A12.4 protein.
          Length = 1560

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = -2

Query: 567  PTTHEIYPLTRKPSRTASSATCLNLLRPSSTEQFRFFCENPSEPAGNIAISSTLHCLAVS 388
            PTT +   +  + +   +S+      RP ST  F  +   P+ P G+  I++T+    V+
Sbjct: 1380 PTTRQTEHIDNEVTALITSSLAPQKTRPKSTPHFTVYPVRPTTPMGD-TITTTMQAATVT 1438


>Z68319-1|CAA92699.1|  598|Caenorhabditis elegans Hypothetical
           protein T23G7.1 protein.
          Length = 598

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 431 PAGSEGFSQKNLNCSVEEGLRRFKQVADEAVRD 529
           P G   FS K      E+GL  + +VADE V D
Sbjct: 70  PTGLRHFSTKVCEKVKEKGLTNYNEVADELVAD 102


>AY028165-1|AAK19021.1|  598|Caenorhabditis elegans DPL-1 protein.
          Length = 598

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 431 PAGSEGFSQKNLNCSVEEGLRRFKQVADEAVRD 529
           P G   FS K      E+GL  + +VADE V D
Sbjct: 70  PTGLRHFSTKVCEKVKEKGLTNYNEVADELVAD 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,289,816
Number of Sequences: 27780
Number of extensions: 275079
Number of successful extensions: 869
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)