Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5c07
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.44 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.44 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.1  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              22   4.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   4.1  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   5.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.1  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 550 YFMCCWLSLRWTDSPEKYC 606
           Y+ CCW  + WT +    C
Sbjct: 485 YYPCCWWKICWTITTPAIC 503


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 550 YFMCCWLSLRWTDSPEKYC 606
           Y+ CCW  + WT +    C
Sbjct: 538 YYPCCWWKICWTITTPAIC 556


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 554 SCVVGCPYDGPIHPK 598
           S VVG P D PI P+
Sbjct: 285 SSVVGSPRDSPIEPE 299


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = -1

Query: 157 INSDFRGYC---TKTTLQEVIRTEY 92
           + S +R  C   TKTT+++V  TEY
Sbjct: 35  MTSKYRKKCIGETKTTIEDVEATEY 59


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 235 FTNEFNFNVCWNKLRFILKAISRSYFI 155
           FT  +N+++ W +   ILK +  S  +
Sbjct: 257 FTYTYNYSMYWGQGHAILKGLKTSIIL 283


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = -3

Query: 602 YFSGESVHRRDNQQHMKYIPLLASRHERPRPRPV*IF*DLLPPSNLDFFVKILPNQQEI* 423
           Y S  S +  DN  + K    +    + P P PV I+    PP  +  ++ I   Q++I 
Sbjct: 89  YISNISNYNNDNNYNKKLYYNINYIEQIPVPVPVPIYCGNFPPRPMGPWISI---QEQIP 145

Query: 422 QF 417
           +F
Sbjct: 146 RF 147


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 565 WLSLRWTDS 591
           W++L WTDS
Sbjct: 94  WMTLMWTDS 102


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 419 IAIFPAGSEGFSQKNLNCSVEEGLRRFK 502
           +A  P  S   S+ ++ CS   GLR F+
Sbjct: 6   VAFLPVKSFRESRCSVRCSAASGLRWFE 33


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 214 NVCWNKLRFILKAISR 167
           +VC+N L+FI++ + R
Sbjct: 80  DVCFNDLKFIIEFVYR 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,503
Number of Sequences: 438
Number of extensions: 3262
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)