Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5c06
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    28   0.98 
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   3.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   5.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.2  
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    25   9.1  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    25   9.1  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    25   9.1  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   9.1  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   9.1  

>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 503 P*PTSSRTGPPQTRRGRAAHQPSSTPSSWRV 595
           P PT+     P+  RG+A ++PS    +W++
Sbjct: 337 PVPTNVVKANPRVNRGKAGYEPSENIINWKI 367


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 351 NPVLSHG-GLLLDRYGEPPRLREAILRC 431
           +P L +G G+L DRYG      EA ++C
Sbjct: 437 DPKLWYGIGILYDRYGSHEHAEEAFMQC 464


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = +2

Query: 374 LTSRSIR*TAPASRSYSSMLRLKNASTRPSSLTTCS*GES*QAP*PTSSRTGPPQTRRGR 553
           LTS +    A ++ + SS  +   +S  PSS  + +   S  +   TS+ + P  +    
Sbjct: 255 LTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNST 314

Query: 554 AAHQPSSTP--SSWRVTSPTASGRSSRP 631
                SSTP  S     S TA+  SS P
Sbjct: 315 TTTSASSTPLSSVSSANSTTATSTSSTP 342


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = +2

Query: 503 P*PTSSRTG----PPQTRRGRAAHQPSSTPSSWRVTSPTASGRS 622
           P P S+  G    PPQ R       P S PS+ R   P +S R+
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRA 384


>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 26  HTRIGLIYLNFLRIISRLLRQCV*RLDLYN 115
           H RI  I L F+R+ S++ R CV  +++Y+
Sbjct: 327 HARIKNIEL-FIRLYSQMYRHCVPIIEIYD 355


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 554 AAHQPSSTPSSWRVTSPTASGRSSRPA 634
           ++ QP STP+     SP+A  ++ RP+
Sbjct: 38  SSQQPPSTPNGKEAASPSALKQNVRPS 64


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 195 NSPHLNFSYNHRFFDDTQKNMR 130
           +SP+++F+Y+   F D QK +R
Sbjct: 95  SSPNMDFTYSINSFGDYQKQLR 116


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 256 VSPVTIRDEWLTMEQTCYNMMRKQIQEEV 342
           +S  +++  ++  EQ  Y   +KQ QEE+
Sbjct: 39  LSDASVKSSYVDQEQQAYENWKKQEQEEI 67


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +1

Query: 460 KLIDYLLMRGKLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVI 624
           +L DY+L R +L  SV   +  +  +  ++      +   LKLE+ + ++ R ++
Sbjct: 584 ELFDYILARRRLEDSVACRLFAQLISGVAYLHSRGVVHRDLKLENILLDTNRNIV 638


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,312,465
Number of Sequences: 5004
Number of extensions: 44231
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)