Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5c06
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 58 4e-09
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 52 3e-07
09_04_0161 - 15232074-15232139,15232299-15232406,15233417-152335... 33 0.14
10_01_0026 - 351737-353443 31 0.58
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 30 1.8
12_02_0674 - 21745321-21746223,21746229-21747608 29 2.3
12_02_0385 + 18424617-18425594,18426811-18426850,18427581-184276... 29 2.3
07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758 29 3.1
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 29 3.1
02_05_0448 - 29100674-29100716,29100821-29100902,29101010-291011... 28 5.4
04_03_1002 - 21617339-21617362,21618476-21618565,21618755-216194... 28 7.1
11_04_0154 + 14172294-14172459,14172993-14173054,14174781-141748... 27 9.4
08_02_0819 - 21529913-21530064,21531016-21531082,21531284-215313... 27 9.4
05_03_0511 + 14907475-14907933,14907948-14908178,14908520-149088... 27 9.4
05_03_0458 + 14280953-14281866,14281964-14282912 27 9.4
01_06_1124 - 34679205-34680926,34681438-34682811 27 9.4
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 58.4 bits (135), Expect = 4e-09
Identities = 40/109 (36%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Frame = +1
Query: 304 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 483
C + +QI E AS Y ++ AYF D V GFAK F +++ EER+HA KL+ Y M
Sbjct: 91 CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150
Query: 484 RG---KLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREV 621
RG +L VT L + P A+E AL LE V + +
Sbjct: 151 RGGRVRLQSIVTPLTEFDHPEK---GDALYAMELALALEKLVNEKLHNL 196
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 52.4 bits (120), Expect = 3e-07
Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +1
Query: 337 EVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 507
E AS Y ++ AYF D V GFAK F +++ EER+HA KLI Y MRG +L V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193
Query: 508 TDLITYRAP 534
T L + P
Sbjct: 194 TPLTEFDHP 202
>09_04_0161 -
15232074-15232139,15232299-15232406,15233417-15233506,
15233617-15233733,15234408-15234527,15234930-15236168
Length = 579
Score = 33.5 bits (73), Expect = 0.14
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = +2
Query: 401 APASRSYSSMLRLKNASTRPSSLTTCS*GES*QAP*PTSSRTGPPQTRRGRAA-HQPSST 577
+P +R R KN + S+ TT S +P TS+ P+ +R ++A + ST
Sbjct: 31 SPVNRGRDVASRYKNGLSAHSAATTARRCTS-PSPGRTSANECTPEPKRAQSADRRRPST 89
Query: 578 PSSWRVTSP-TASGRSSRPAR 637
PSS RV++P T + RS P R
Sbjct: 90 PSS-RVSTPSTPASRSVTPVR 109
>10_01_0026 - 351737-353443
Length = 568
Score = 31.5 bits (68), Expect = 0.58
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Frame = +2
Query: 401 APASRSYSSMLRLKNASTRPSSLTTCS*GES*QAP*PTSSRTGPPQTRRGRAAH---QPS 571
+P S S+ +A + SSL+ S +P P +S PP++ G ++ QPS
Sbjct: 4 SPESSPSSANSTTPSAPSPSSSLSKSPSPPSPSSPPPPASTNAPPKSAGGVSSSTQAQPS 63
Query: 572 STPSSWRVTSPTA-----SGRSSR 628
S SS T+P+A SG SSR
Sbjct: 64 SESSSESTTTPSAPAERKSGGSSR 87
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 497 QAP*PTSSRTGPPQTRRGRAAHQPSSTPSSWRVTSPTASGRSSRP 631
Q+P P ++ T P T AA P + PS + SPT + ++P
Sbjct: 101 QSPLPPTTTTTTPPTAPVPAAAPPPTAPSPYSAPSPTPTPTHTQP 145
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = +2
Query: 443 NASTRPSSLTTCS*GES*QAP*PTSSRTGPPQTRRGRAAHQPSSTPSSWRVTSPTASGRS 622
+ S PS+ +TC + P+++ T P T G+ + PS++P S TS T+S S
Sbjct: 552 STSKIPSTPSTCELSTA-TGKIPSTTCTSPLSTATGKTSSTPSTSPLS-TSTSKTSSTPS 609
Query: 623 SRP 631
+ P
Sbjct: 610 TSP 612
>12_02_0385 +
18424617-18425594,18426811-18426850,18427581-18427636,
18428032-18428151
Length = 397
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 509 PTSSRTGPPQTRRGRAAHQPSSTPSSWRVTSPTASGRSS 625
PTSS T PPQ + G +P++T S PTA+ +S
Sbjct: 43 PTSSSTPPPQRQEG---PRPAATSSLHETAGPTAAESAS 78
>07_03_0234 + 15561003-15561482,15562495-15562590,15562663-15562758
Length = 223
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +2
Query: 530 PPQTRRGRAAHQPSSTPSSWRVTSPTASGRS 622
PP + R RA PSS PSS ++PTA+G S
Sbjct: 33 PPPSARARARAGPSS-PSSSSPSTPTAAGLS 62
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 364 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLL 480
A+ YF + TV P A FF + +RE T L+D LL
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL 151
>02_05_0448 -
29100674-29100716,29100821-29100902,29101010-29101130,
29101481-29101546,29101628-29101735,29102083-29102148,
29102605-29102633,29102773-29102902
Length = 214
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -2
Query: 285 PLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLNFSYNHRFFDDTQKN 136
P+I G+ D + C D KE PH RFF+D +KN
Sbjct: 129 PMIDQGEKDDKIIAVCADDPEYRHFRDIKEIPPH-RLQEIRRFFEDYKKN 177
>04_03_1002 -
21617339-21617362,21618476-21618565,21618755-21619432,
21619536-21619772,21619849-21619896,21619995-21620045,
21620301-21620426,21620557-21620697,21621165-21621401,
21622467-21622571,21622812-21622982,21623306-21623380,
21623754-21623936,21624151-21624297,21624365-21624472,
21624605-21624709,21625109-21625213,21625322-21625381,
21625512-21625579,21625876-21625954,21626208-21626267,
21626445-21626498,21626834-21626886,21627405-21627494,
21628265-21628362,21628464-21628852
Length = 1193
Score = 27.9 bits (59), Expect = 7.1
Identities = 25/59 (42%), Positives = 31/59 (52%)
Frame = +2
Query: 458 PSSLTTCS*GES*QAP*PTSSRTGPPQTRRGRAAHQPSSTPSSWRVTSPTASGRSSRPA 634
PSS ++ + G P +SS G P T AA S+TPSS R T+P S SSR A
Sbjct: 49 PSSSSSAAGGGRPTTP-SSSSAGGRPTTPS--AAFARSTTPSSGRPTTP--SSASSRAA 102
>11_04_0154 +
14172294-14172459,14172993-14173054,14174781-14174859,
14174964-14175164,14175420-14175610
Length = 232
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 516 HHVQGPRKHVVGERRISPRAR 578
H+ GPR H+ G RR PRAR
Sbjct: 18 HYATGPRTHLPGPRR-KPRAR 37
>08_02_0819 -
21529913-21530064,21531016-21531082,21531284-21531373,
21531506-21531622,21532026-21532145,21532313-21533581
Length = 604
Score = 27.5 bits (58), Expect = 9.4
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +2
Query: 401 APASRSYSSMLRLKNASTRPSSLTTCS*GES*QAP*PT--SSRTGPPQTRRGRAAHQP-S 571
APA R R K+ T P+ S +P + S+ G T R ++A + S
Sbjct: 32 APAGRRREVASRFKSGGT-PAPQAAASSVRRCTSPSLSRASAAEGTASTNRAQSAERRRS 90
Query: 572 STPSSWRVTSPTASGRSSRP 631
STPSS S G +SRP
Sbjct: 91 STPSSSSTPSGGGGGAASRP 110
>05_03_0511 +
14907475-14907933,14907948-14908178,14908520-14908855,
14909571-14910126,14910217-14910424,14910519-14910885,
14910988-14911110
Length = 759
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +2
Query: 521 RTGPPQTRRGRAAHQPSSTPSSWRVTSPT--ASGRSSRPA 634
R GPP R A PSS+PSS S + S R+S PA
Sbjct: 41 RRGPPLLRAASTAAPPSSSPSSQSPGSLSIQLSPRASPPA 80
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 27.5 bits (58), Expect = 9.4
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Frame = +2
Query: 353 SST*PWGLTS--RSIR*TAPASRSYSSMLRLKNASTRPSSLTTCS*GES*QA---P*PTS 517
S++ +G TS S R AP+ S +S T P SLTT S S + P P
Sbjct: 12 SASSSYGPTSPPSSCRNAAPSPPSSNSTPTSSTTPTVPPSLTTTSSPSSSPSSPPPLPPL 71
Query: 518 SRTGP--PQTRRGRAAHQPSSTPSSWRVTSPTAS 613
T P P T ++H P+ P TSP+AS
Sbjct: 72 QPTPPPLPPTTLSCSSH-PTPPPPPSPTTSPSAS 104
>01_06_1124 - 34679205-34680926,34681438-34682811
Length = 1031
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 348 VNPVLSHGGLLLDRYGEPPRLREA 419
+NP + H G ++D G RLREA
Sbjct: 355 INPDVKHFGCIIDMLGRAGRLREA 378
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,226,876
Number of Sequences: 37544
Number of extensions: 350976
Number of successful extensions: 1132
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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