Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5c02
(629 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 233 3e-60
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 226 4e-58
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 225 9e-58
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 223 2e-57
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 221 1e-56
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 220 2e-56
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 220 3e-56
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 218 1e-55
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 214 2e-54
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 211 1e-53
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 200 2e-50
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 198 7e-50
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 195 8e-49
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 191 1e-47
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 190 3e-47
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 190 3e-47
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 182 6e-45
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 181 1e-44
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 180 3e-44
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 178 8e-44
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 178 8e-44
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 178 1e-43
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 176 4e-43
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 172 5e-42
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 163 4e-39
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 159 7e-38
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 156 4e-37
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 150 2e-35
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 149 4e-35
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 149 7e-35
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 148 9e-35
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 146 5e-34
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 146 5e-34
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 142 6e-33
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 138 8e-32
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 130 3e-29
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 130 4e-29
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 117 2e-25
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 117 3e-25
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 115 1e-24
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 114 1e-24
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 114 2e-24
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 111 2e-23
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 110 3e-23
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 108 1e-22
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 107 2e-22
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 105 9e-22
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 105 1e-21
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 105 1e-21
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 104 2e-21
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 103 5e-21
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 102 8e-21
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 100 2e-20
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 100 6e-20
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 99 8e-20
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 98 1e-19
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 98 2e-19
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 95 2e-18
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 93 7e-18
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 91 2e-17
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 90 4e-17
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 90 5e-17
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 90 5e-17
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 89 1e-16
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 87 3e-16
UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec... 87 3e-16
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 87 4e-16
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 86 6e-16
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 86 8e-16
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 85 1e-15
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 85 2e-15
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 84 2e-15
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 84 2e-15
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 84 3e-15
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 83 7e-15
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ... 82 1e-14
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 82 1e-14
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 80 4e-14
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 80 4e-14
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 80 5e-14
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 79 7e-14
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte... 77 4e-13
UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; En... 76 6e-13
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 74 3e-12
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 74 3e-12
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium... 73 6e-12
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 71 2e-11
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 71 2e-11
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 71 3e-11
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 65 1e-09
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 65 2e-09
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 59 8e-08
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te... 58 1e-07
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 57 3e-07
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 56 9e-07
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 52 2e-05
UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441; ... 50 3e-05
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela... 48 2e-04
UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome ox... 46 6e-04
UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6; Di... 46 0.001
UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1; Ha... 45 0.002
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 44 0.003
UniRef50_Q6TP93 Cluster: Cytochrome c oxidase subunit I; n=2; Br... 39 0.11
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu... 37 0.35
UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4; C... 34 3.2
UniRef50_O67937 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 33 4.3
UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7; Locu... 33 5.7
UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2; ... 33 7.5
UniRef50_Q5ABE2 Cluster: Putative uncharacterized protein CLN3; ... 33 7.5
UniRef50_Q8ID15 Cluster: Putative uncharacterized protein MAL13P... 32 9.9
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 233 bits (570), Expect = 3e-60
Identities = 122/197 (61%), Positives = 130/197 (65%)
Frame = +3
Query: 3 DQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXX 182
DQIYNTIVTAHA N L+PL+LGAPD+AFPR+NN+ F
Sbjct: 24 DQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPDMAFPRMNNMSFWLLPPSLI 83
Query: 183 XXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 362
IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHLAGISS
Sbjct: 84 LLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISSILGAINFITTIIN 143
Query: 363 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPIL 542
SFDQ+PLF+ AVGITA AGAIT+LLTDRNLNTSFFDPAGGGDPIL
Sbjct: 144 MRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPIL 203
Query: 543 YQHLF*FFGHPEVYILI 593
YQHLF FFGHPEVYILI
Sbjct: 204 YQHLFWFFGHPEVYILI 220
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 226 bits (552), Expect = 4e-58
Identities = 119/193 (61%), Positives = 127/193 (65%)
Frame = +3
Query: 3 DQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXX 182
DQIYNTIVTAHA N LVPL+LGAPD+AFPR+NN+ F
Sbjct: 48 DQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLT 107
Query: 183 XXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 362
IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHLAGISS
Sbjct: 108 LLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISSILGAINFITTIIN 167
Query: 363 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPIL 542
SFDQ+PLFV AVGITAF AGAIT+LLTDRNLNTSFFDPAGGGDPIL
Sbjct: 168 MRMNNLSFDQMPLFVWAVGITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPIL 227
Query: 543 YQHLF*FFGHPEV 581
YQHLF FFGHP++
Sbjct: 228 YQHLFWFFGHPKL 240
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 225 bits (549), Expect = 9e-58
Identities = 119/209 (56%), Positives = 133/209 (63%)
Frame = +3
Query: 3 DQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXX 182
DQIYN IVTAHA N LVPL++GAPD+AFPR+NN+ F
Sbjct: 52 DQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLXPPSFL 111
Query: 183 XXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 362
VE GAGTG TVYPPL+ N+AH G SVDLAIFSLHLAGISS
Sbjct: 112 LLLASSTVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGISSILGAINFITTAIN 171
Query: 363 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPIL 542
S Q PLFV +V ITA A IT+LLTDRNLNT+FFDPAGGGDPIL
Sbjct: 172 MKPPAISQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPIL 231
Query: 543 YQHLF*FFGHPEVYILILPGFGIISHIIS 629
YQHLF FFGHPEVYILILPGFG+ISH+++
Sbjct: 232 YQHLFWFFGHPEVYILILPGFGMISHVVT 260
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 223 bits (546), Expect = 2e-57
Identities = 117/209 (55%), Positives = 131/209 (62%)
Frame = +3
Query: 3 DQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXX 182
DQIYN IVTAHA N LVPL++GAPD+AFPR+NN+ F
Sbjct: 51 DQIYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFL 110
Query: 183 XXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 362
VE GAGTG TVYPPL+ N+AH G SVDL IFSLHLAG+SS
Sbjct: 111 LLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTTIN 170
Query: 363 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPIL 542
S Q PLFV AV +TA A IT+LLTDRNLNT+FFDPAGGGDPIL
Sbjct: 171 MKPPTISQYQTPLFVWAVLVTAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPIL 230
Query: 543 YQHLF*FFGHPEVYILILPGFGIISHIIS 629
YQHLF FFGHPEVYILILPGFGIISH+++
Sbjct: 231 YQHLFWFFGHPEVYILILPGFGIISHVVA 259
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 221 bits (539), Expect = 1e-56
Identities = 112/208 (53%), Positives = 131/208 (62%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
Q+YN I+TAHA N LVP+++GAPD+AFPR+NNI F
Sbjct: 52 QLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLIL 111
Query: 186 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 365
VE GAGTG TVYPPLS +H G SVDLAIFSLHL+GISS
Sbjct: 112 LLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNM 171
Query: 366 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 545
+ +LPLFV A+ +TA AGAIT+LLTDRN NTSF+DPAGGGDPILY
Sbjct: 172 RNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAGAITMLLTDRNFNTSFYDPAGGGDPILY 231
Query: 546 QHLF*FFGHPEVYILILPGFGIISHIIS 629
QHLF FFGHPEVYILI+PGFG++SHI+S
Sbjct: 232 QHLFWFFGHPEVYILIIPGFGMVSHIVS 259
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 220 bits (538), Expect = 2e-56
Identities = 111/208 (53%), Positives = 132/208 (63%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
Q+YN ++TAHA N VP+++GAPD+AFPR+NNI F
Sbjct: 55 QLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLL 114
Query: 186 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 365
+VE G+GTG TVYPPLS +H G +VDLAIFSLHL+G+SS
Sbjct: 115 LLSSALVEVGSGTGWTVYPPLSGITSHSGGAVDLAIFSLHLSGVSSILGSINFITTIFNM 174
Query: 366 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 545
+ +LPLFV +V +TAF AGAIT+LLTDRN NT+FFDPAGGGDPILY
Sbjct: 175 RGPGMTMHRLPLFVWSVLVTAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILY 234
Query: 546 QHLF*FFGHPEVYILILPGFGIISHIIS 629
QHLF FFGHPEVYILILPGFGIISHI+S
Sbjct: 235 QHLFWFFGHPEVYILILPGFGIISHIVS 262
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 220 bits (537), Expect = 3e-56
Identities = 114/209 (54%), Positives = 131/209 (62%)
Frame = +3
Query: 3 DQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXX 182
DQIYN IVTAHA N LVPL++GAPD+AFPR+NN+ F
Sbjct: 51 DQIYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFL 110
Query: 183 XXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 362
VE GAGTG TVYPPL+ N+AH G SVDL IFSLHLAG+SS
Sbjct: 111 LLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIIN 170
Query: 363 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPIL 542
+ Q PLFV +V +TA A IT+LLTDRNLNT+FFDPAGGGDPIL
Sbjct: 171 MKPPAITQYQTPLFVWSVLVTAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPIL 230
Query: 543 YQHLF*FFGHPEVYILILPGFGIISHIIS 629
YQHLF FFGHPEVYILILPGFG+ISH+++
Sbjct: 231 YQHLFWFFGHPEVYILILPGFGMISHVVT 259
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 218 bits (532), Expect = 1e-55
Identities = 114/209 (54%), Positives = 130/209 (62%)
Frame = +3
Query: 3 DQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXX 182
D IYN IVTAHA N LVPL++GAPD+AFPR+NN+ F
Sbjct: 51 DHIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLL 110
Query: 183 XXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 362
+VE GAGTG TVYPPL+ N +H G SVDL IFSLHLAG+SS
Sbjct: 111 LLLASAMVEAGAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIIN 170
Query: 363 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPIL 542
+ Q PLFV +V ITA A IT+LLTDRNLNT+FFDPAGGGDPIL
Sbjct: 171 MKPPAMTQYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPIL 230
Query: 543 YQHLF*FFGHPEVYILILPGFGIISHIIS 629
YQHLF FFGHPEVYILILPGFG+ISHI++
Sbjct: 231 YQHLFWFFGHPEVYILILPGFGMISHIVT 259
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 214 bits (522), Expect = 2e-54
Identities = 109/208 (52%), Positives = 131/208 (62%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
QIYN ++TAHA N LVP+++G+PD+AFPR+NNI F
Sbjct: 60 QIYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAFPRLNNISFWLLPPSLCL 119
Query: 186 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 365
+VE G GTG TVYPPLSS +H G +VDLAIFSLH++G SS
Sbjct: 120 LLMSALVEVGVGTGWTVYPPLSSIQSHSGGAVDLAIFSLHISGASSILGAVNFISTILNM 179
Query: 366 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 545
S ++PLFV ++ +TAF AGAIT+LLTDRN NTSFFD +GGGDPILY
Sbjct: 180 RSPGQSMYRIPLFVWSILVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDASGGGDPILY 239
Query: 546 QHLF*FFGHPEVYILILPGFGIISHIIS 629
QHLF FFGHPEVYILILPGFG+ISHI+S
Sbjct: 240 QHLFWFFGHPEVYILILPGFGMISHIVS 267
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 211 bits (515), Expect = 1e-53
Identities = 109/208 (52%), Positives = 128/208 (61%)
Frame = +3
Query: 3 DQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXX 182
DQIYN+IVT+HA N L+PL+LG+PD++FPR+NN+ F
Sbjct: 35 DQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPDMSFPRMNNMSFWLLIPSLL 94
Query: 183 XXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 362
+ G GTG TVYPPLS + H G SVDL IFSLHLAG SS
Sbjct: 95 LLILSMFINVGVGTGWTVYPPLSLILGHGGMSVDLGIFSLHLAGASSIMGAVNFITTILN 154
Query: 363 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPIL 542
+ D++ LF +V ITA AGAIT+LLTDRN+NTSFFDP+GGGDPIL
Sbjct: 155 MRSNLFNMDKMSLFSWSVFITAILLLLSLPVLAGAITMLLTDRNMNTSFFDPSGGGDPIL 214
Query: 543 YQHLF*FFGHPEVYILILPGFGIISHII 626
YQHLF FFGHPEVYILILPGFGIISH+I
Sbjct: 215 YQHLFWFFGHPEVYILILPGFGIISHMI 242
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 200 bits (489), Expect = 2e-50
Identities = 104/208 (50%), Positives = 125/208 (60%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
Q++N +V HA N L+PL++GA D AFPRINNI F
Sbjct: 53 QLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVC 112
Query: 186 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 365
+VE+GAGTG TVYPPLSS AH G SVDLAIF+LHL ISS
Sbjct: 113 LVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNM 172
Query: 366 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 545
+ +LPLFV ++ ITAF + IT+LL DRN NTSFF+ +GGGDPILY
Sbjct: 173 RTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILY 232
Query: 546 QHLF*FFGHPEVYILILPGFGIISHIIS 629
+HLF FFGHPEVYILI+PGFGIISH++S
Sbjct: 233 EHLFWFFGHPEVYILIIPGFGIISHVVS 260
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 198 bits (484), Expect = 7e-50
Identities = 103/208 (49%), Positives = 124/208 (59%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
Q++N +V HA N ++PL++GA D++FPRIN+I F
Sbjct: 53 QLFNVLVVGHAVLMIFFLAMPALIGGFGNYMLPLMIGATDMSFPRINSIGFWLLPMGLVC 112
Query: 186 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 365
+VE+GAGTG TVYPPLSS AH G SVDLAIFSLHL ISS
Sbjct: 113 LVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFSLHLTSISSLLGAINFIVTTLNM 172
Query: 366 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 545
S ++PLFV A+ ITAF + IT+LL DRN NTSFF+ AGGGDPI Y
Sbjct: 173 RTNGMSMHKMPLFVWAIFITAFLLLLSLPVLSAGITMLLMDRNFNTSFFEVAGGGDPIFY 232
Query: 546 QHLF*FFGHPEVYILILPGFGIISHIIS 629
QH F FFGHPEVYILI+PGFGI+SHI+S
Sbjct: 233 QHAFWFFGHPEVYILIIPGFGIVSHIVS 260
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 195 bits (475), Expect = 8e-49
Identities = 105/209 (50%), Positives = 122/209 (58%)
Frame = +3
Query: 3 DQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXX 182
+Q+YN+I+TAHA N L+PL LG PD+ FPR+NNI +
Sbjct: 52 NQLYNSIITAHAIIMIFFMVMPALIGGFGNFLLPLGLGGPDMGFPRLNNISYLLLIPSIV 111
Query: 183 XXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 362
+ENG GTG T+YPPLS +H G SVDLAIF LHL+GISS
Sbjct: 112 LFLFAGGIENGVGTGWTLYPPLSGIQSHSGPSVDLAIFGLHLSGISSLLGAMNFMTTTFN 171
Query: 363 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPIL 542
+L LF AV ITA AG IT++LTDRN NTSFF+ AGGGDPIL
Sbjct: 172 MRSPGIRLHKLILFAWAVVITAVLLLLSLPVLAGGITMVLTDRNFNTSFFEVAGGGDPIL 231
Query: 543 YQHLF*FFGHPEVYILILPGFGIISHIIS 629
YQHLF FFGHPEVYILI+PGFGIIS IS
Sbjct: 232 YQHLFWFFGHPEVYILIIPGFGIISTTIS 260
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 191 bits (465), Expect = 1e-47
Identities = 99/209 (47%), Positives = 122/209 (58%)
Frame = +3
Query: 3 DQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXX 182
+Q+YN+I+T+H N L+P+++G PD+AFPR+NN+ +
Sbjct: 78 NQLYNSIITSHGVIMIFFMVMPALIGGFGNFLLPILIGGPDMAFPRLNNVSYWLLIPSLF 137
Query: 183 XXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 362
I+ENG GTG T+YPPLS +H VDL IF LHL+GISS
Sbjct: 138 LFVFAAIIENGVGTGWTLYPPLSGIQSHSSMGVDLGIFGLHLSGISSLLGAINFIATLLN 197
Query: 363 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPIL 542
+L LF AV ITA A AIT+LLTDRNLNTSF++ AGGGD IL
Sbjct: 198 MRSPGIKLHKLALFGWAVVITAVLLLLSLPVLAAAITMLLTDRNLNTSFYELAGGGDAIL 257
Query: 543 YQHLF*FFGHPEVYILILPGFGIISHIIS 629
YQHLF FFGHPEVYILI+PGFGIIS +IS
Sbjct: 258 YQHLFWFFGHPEVYILIIPGFGIISTVIS 286
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 190 bits (462), Expect = 3e-47
Identities = 98/206 (47%), Positives = 114/206 (55%)
Frame = +3
Query: 12 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 191
YN I T H N VP+++GAPD++FPR+NN F
Sbjct: 58 YNMITTVHGVLMLFVVVMPILFGGFGNYFVPILIGAPDMSFPRLNNFSFWLLPGAILLAV 117
Query: 192 XXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXX 371
E G GTG TVYPPLSS +H G SVDL IFS HL GI S
Sbjct: 118 LATYSEGGPGTGWTVYPPLSSLQSHSGASVDLMIFSFHLVGIGSIVAAINFICTIFYYKN 177
Query: 372 XXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 551
LPLFV +V +T+F A AIT+LL DRN NTSF+DP GGGD +LYQH
Sbjct: 178 EAMFNKDLPLFVWSVAVTSFLVIVAIPVLAAAITLLLFDRNFNTSFYDPVGGGDVVLYQH 237
Query: 552 LF*FFGHPEVYILILPGFGIISHIIS 629
LF FFGHPEVYILILPGFG++SHII+
Sbjct: 238 LFWFFGHPEVYILILPGFGLVSHIIA 263
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 190 bits (462), Expect = 3e-47
Identities = 102/181 (56%), Positives = 120/181 (66%)
Frame = -2
Query: 556 NKC*YKIGSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDI 377
NKC + IGSPPPAGSK +VFKFRSV +IVIAPA TGS++N+K AV T TN G S I
Sbjct: 1 NKC-WSIGSPPPAGSKKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVI 59
Query: 376 LFNRXXXXXXXXXXXXXIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTIL 197
+R I+E PAKC+EKI STD P CAI SGG TVHPVP P STI
Sbjct: 60 PADRMLITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIP 119
Query: 196 LEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIV 17
L + ++EGG +QNL+LFIRGNA+SGAP++ GTNQFPNPP KA AVT+
Sbjct: 120 LNKSKVKEGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMT 179
Query: 16 L 14
L
Sbjct: 180 L 180
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 182 bits (443), Expect = 6e-45
Identities = 97/185 (52%), Positives = 109/185 (58%)
Frame = +3
Query: 3 DQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXX 182
DQ+YN +VTAHA N LVPL+LGAPD+AFPR+NN+ F
Sbjct: 34 DQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRLNNMSFWFLPPSLS 93
Query: 183 XXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 362
VE+GAGTG TVYPPLS N AH G SVDLAIFSLHLAG+SS
Sbjct: 94 LLLMSAAVESGAGTGWTVYPPLSGNTAHAGPSVDLAIFSLHLAGVSSILGAVNFITTVIN 153
Query: 363 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPIL 542
+ + LFV +V ITA AGAIT+LLTDRN NTSFFDPAGGGDPIL
Sbjct: 154 MRWGAMKIELVSLFVWSVKITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDPIL 213
Query: 543 YQHLF 557
YQHLF
Sbjct: 214 YQHLF 218
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 181 bits (441), Expect = 1e-44
Identities = 86/207 (41%), Positives = 121/207 (58%)
Frame = +3
Query: 9 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 188
++N ++T H N +PL++GAPD+AFPR+NN+ +
Sbjct: 159 LWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFPRLNNLSYWMYVAGTCLA 218
Query: 189 XXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 368
+++ GAG G T YPP+S+ R+VD AIF++H++G SS
Sbjct: 219 FCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGASSILGSINFITTFLNMR 278
Query: 369 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQ 548
+ ++PLF +V +TA+ AGAIT+LLTDRN T+FFDPAGGGDPIL+Q
Sbjct: 279 APGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGAITMLLTDRNFGTTFFDPAGGGDPILFQ 338
Query: 549 HLF*FFGHPEVYILILPGFGIISHIIS 629
H+F FFGHPEVYI+ILP FG+ISHI++
Sbjct: 339 HIFWFFGHPEVYIVILPAFGVISHIVA 365
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 180 bits (437), Expect = 3e-44
Identities = 96/189 (50%), Positives = 111/189 (58%)
Frame = +3
Query: 3 DQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXX 182
D +YN IVTAHA N VPL++GAPD+AFPR+NNI F
Sbjct: 52 DHLYNVIVTAHAFVMIFFLVMPTMIGGFGNWFVPLMIGAPDMAFPRLNNISFWLLPPALF 111
Query: 183 XXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 362
+VE GAGTG TVYPPL+S AH G SVD+AIFSLHLAG+SS
Sbjct: 112 LLLGSSLVEQGAGTGWTVYPPLASIQAHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMN 171
Query: 363 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPIL 542
+ ++PLFV +V ITA AGAIT+LLTDR NT+FFDPAGGGDPIL
Sbjct: 172 MRTPGMTMSRIPLFVWSVLITAILLLLSLPVLAGAITMLLTDRYFNTTFFDPAGGGDPIL 231
Query: 543 YQHLF*FFG 569
YQHLF FFG
Sbjct: 232 YQHLFWFFG 240
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 178 bits (434), Expect = 8e-44
Identities = 89/207 (42%), Positives = 121/207 (58%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 70 QLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLF 129
Query: 186 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 365
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 130 AVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINM 189
Query: 366 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 545
+ +LPLFV +V ITA A +T+LL DRN NTSFF +GGGDP+LY
Sbjct: 190 RANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLY 249
Query: 546 QHLF*FFGHPEVYILILPGFGIISHII 626
+H+F FFGHPEVYILI+P FG++S I+
Sbjct: 250 EHIFWFFGHPEVYILIVPVFGVVSQIV 276
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 178 bits (434), Expect = 8e-44
Identities = 89/207 (42%), Positives = 121/207 (58%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 70 QLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLF 129
Query: 186 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 365
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 130 AVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINM 189
Query: 366 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 545
+ +LPLFV +V ITA A +T+LL DRN NTSFF +GGGDP+LY
Sbjct: 190 RANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLY 249
Query: 546 QHLF*FFGHPEVYILILPGFGIISHII 626
+H+F FFGHPEVYILI+P FG++S I+
Sbjct: 250 EHIFWFFGHPEVYILIVPVFGVVSQIV 276
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 178 bits (433), Expect = 1e-43
Identities = 97/211 (45%), Positives = 121/211 (57%), Gaps = 4/211 (1%)
Frame = +3
Query: 9 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 188
++N ++TAH N VP+++GAPD+AFPR+NNI F
Sbjct: 93 LWNVLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALL 152
Query: 189 XXXXIVE----NGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 356
V NGAGTG TVY PLS++ G +VD+AI SLH+AG SS
Sbjct: 153 LGSTFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTI 211
Query: 357 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDP 536
+ ++PLFV +V +TAF A AIT+LLTDRN T+F+D AGGGDP
Sbjct: 212 LNMRAPGMTLHKMPLFVWSVLVTAFLLLLALPVLAAAITMLLTDRNFGTTFYDAAGGGDP 271
Query: 537 ILYQHLF*FFGHPEVYILILPGFGIISHIIS 629
LYQHLF FFGHPEVYI+ILPGFGIIS I+S
Sbjct: 272 ELYQHLFWFFGHPEVYIMILPGFGIISQIVS 302
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 176 bits (428), Expect = 4e-43
Identities = 93/184 (50%), Positives = 108/184 (58%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
Q+YN I+TAHA N LVP+++GAPD+AFPR+NNI F
Sbjct: 52 QLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLIL 111
Query: 186 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 365
VE GAGTG TVYPPLS +H G SVDLAIFSLHL+GISS
Sbjct: 112 LLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNM 171
Query: 366 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 545
+ +LPLFV A+ +TA AGAIT+LLTDRN NTSF+DPAGGGDPILY
Sbjct: 172 RNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAGAITMLLTDRNFNTSFYDPAGGGDPILY 231
Query: 546 QHLF 557
QHLF
Sbjct: 232 QHLF 235
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 172 bits (419), Expect = 5e-42
Identities = 98/213 (46%), Positives = 120/213 (56%), Gaps = 4/213 (1%)
Frame = +3
Query: 3 DQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXX 182
+Q+YN+I+TAHA N L+PL++G PD+AFPR+NNI F
Sbjct: 80 NQLYNSIITAHAILMIFFMVMPALIGGFGNFLMPLMIGGPDMAFPRLNNISFWLLPPSLL 139
Query: 183 XXXXXXIVENGAGTG*TV----YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXX 350
I+E G GTG T+ YPPLS +H G SVDLAIF+LHL+G+SS
Sbjct: 140 LLVFSAIIEGGVGTGWTLLKDKYPPLSGLQSHSGPSVDLAIFALHLSGVSSLLGSINFIT 199
Query: 351 XXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGG 530
+L LF A + IT++LTDRN NTSFF+ AGGG
Sbjct: 200 TVANMRTPGIKLHKLALFGWATWSSRSRYFL-------GITMVLTDRNFNTSFFEVAGGG 252
Query: 531 DPILYQHLF*FFGHPEVYILILPGFGIISHIIS 629
DPIL+QHLF FFGHPEVYILI+PGFGIIS IS
Sbjct: 253 DPILFQHLFWFFGHPEVYILIIPGFGIISTTIS 285
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 163 bits (395), Expect = 4e-39
Identities = 89/197 (45%), Positives = 109/197 (55%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
Q++N +V HA N L+PL++GA D AFPRINNI F
Sbjct: 53 QLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVC 112
Query: 186 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 365
+VE+GAGTG TVYPPLSS AH G SVDLAIF+LHL ISS
Sbjct: 113 LVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNM 172
Query: 366 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 545
+ +LPLFV ++ ITAF + IT+LL DRN NTSFF+ +GGGDPILY
Sbjct: 173 RTNGMTMHKLPLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILY 232
Query: 546 QHLF*FFGHPEVYILIL 596
+HLF FFG I++L
Sbjct: 233 EHLFWFFGQTVATIIML 249
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 159 bits (385), Expect = 7e-38
Identities = 87/156 (55%), Positives = 96/156 (61%)
Frame = +3
Query: 105 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 284
L LGAPD FPR N+ F VE GAGTG TV PPLS+NIAH G SVD
Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
Query: 285 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 464
LAIFSLH+AG+ S + ++PLFV AV ITA AG
Sbjct: 64 LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123
Query: 465 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 572
AIT+LLTDRN+NTSFFDPAGGGDPILYQHLF F GH
Sbjct: 124 AITMLLTDRNINTSFFDPAGGGDPILYQHLFWFXGH 159
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 156 bits (379), Expect = 4e-37
Identities = 84/189 (44%), Positives = 105/189 (55%)
Frame = +3
Query: 3 DQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXX 182
+Q++N +V HA N ++PL++GA D AFPRINNI F
Sbjct: 52 NQLFNVLVVGHAILMIFFMVMPALIGGFGNYMLPLMIGATDTAFPRINNIGFWLLPMGLV 111
Query: 183 XXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 362
+VE+GAGTG TVYPPL+S AH G SVDLAIF+LH+ ISS
Sbjct: 112 CLVTSTLVESGAGTGWTVYPPLASIQAHSGPSVDLAIFALHMTSISSLLGAINFIVTTLN 171
Query: 363 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPIL 542
+ +LPLFV A+ ITA + +T+LL DRN NTSFF+ AGGGDPIL
Sbjct: 172 MRTNGMTMHKLPLFVWAILITAVLLLLTLPVLSAGVTMLLLDRNFNTSFFEVAGGGDPIL 231
Query: 543 YQHLF*FFG 569
Y+HLF FFG
Sbjct: 232 YEHLFWFFG 240
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 150 bits (364), Expect = 2e-35
Identities = 78/207 (37%), Positives = 104/207 (50%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
Q YN ++T+H N +P++ G PD+ FPR+NN+ F
Sbjct: 55 QFYNVLITSHGLIMVFAFIMPVMMGGLVNYFIPVMAGFPDMVFPRLNNMSFWMYLAGFGC 114
Query: 186 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 365
+ E G G G T+YP L H + D +F++HL GISS
Sbjct: 115 VVNGFLTEEGMGVGWTLYPTLICIDFHSSLACDFVMFAVHLLGISSILNSINLLGTLFCC 174
Query: 366 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 545
SF LF+ A ITA AG +T++L DRN NTSF+D GGGD IL+
Sbjct: 175 RRKFFSFLSWSLFIWAALITAILLIITLPVLAGGVTLILCDRNFNTSFYDVVGGGDLILF 234
Query: 546 QHLF*FFGHPEVYILILPGFGIISHII 626
QH+F FFGHPEVYI++LP FG+IS I+
Sbjct: 235 QHIFWFFGHPEVYIILLPVFGLISTIV 261
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 149 bits (362), Expect = 4e-35
Identities = 79/199 (39%), Positives = 110/199 (55%), Gaps = 2/199 (1%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 70 QLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLF 129
Query: 186 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 365
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 130 AVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINM 189
Query: 366 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 545
+ +LPLFV +V ITA A +T+LL DRN NTSFF +GGGDP+LY
Sbjct: 190 RANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLY 249
Query: 546 QHLF*FFGH--PEVYILIL 596
+H+F FFG P + I+I+
Sbjct: 250 EHIFWFFGQIWPIIIIIII 268
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 149 bits (360), Expect = 7e-35
Identities = 84/172 (48%), Positives = 95/172 (55%)
Frame = +3
Query: 3 DQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXX 182
DQIYN IVTAHA N L+PL++GAPD+AFPR+NN+ F
Sbjct: 40 DQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFL 99
Query: 183 XXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 362
+E GAGTG TVYPPL+ N+AH G SVDL IFSLHLAGISS
Sbjct: 100 LLLASSGIEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIMN 159
Query: 363 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP 518
S Q PLFV AV ITA A IT+LLTDRNLNT+FFDP
Sbjct: 160 MKPPAISQYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDP 211
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 148 bits (359), Expect = 9e-35
Identities = 82/197 (41%), Positives = 105/197 (53%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
Q +N ++TAHA N L+PL+LGA D+AF R+NNI F
Sbjct: 58 QAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLIL 117
Query: 186 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 365
+VE GAGTG TVY PL+ +H G +VDLAIFSLHL+G SS
Sbjct: 118 ILTSALVEAGAGTGWTVYFPLAGIQSHSGPAVDLAIFSLHLSGFSSLLGAINFITTFINM 177
Query: 366 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 545
++ +PLF AV TA A +T+ + DRN NTSFF+ AGGGD +LY
Sbjct: 178 RTIGMKYENVPLFAWAVLFTAILLLLSLPVLAAGLTMGIFDRNFNTSFFEYAGGGDAVLY 237
Query: 546 QHLF*FFGHPEVYILIL 596
QHLF ++ HPEV I+ L
Sbjct: 238 QHLFYWWNHPEVKIICL 254
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 146 bits (353), Expect = 5e-34
Identities = 78/207 (37%), Positives = 109/207 (52%), Gaps = 1/207 (0%)
Frame = +3
Query: 9 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 188
+Y++I+T HA N +PL++ D++ PR+NN+
Sbjct: 55 MYHSIMTMHAFMMIFFFVMPTSIGGLGNWFIPLMIKIKDLSMPRLNNLSVWLALGSLFLM 114
Query: 189 XXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 368
+ G G G T+YPPLS++ G +DLA+FSLH+AG+SS
Sbjct: 115 CMAFLSSGGLGCGWTMYPPLSNSEFMDGLPIDLAVFSLHMAGMSSIAGSINFLVTIFNMR 174
Query: 369 XXXXSFDQL-PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 545
F L P+ + + T+ A +T+LL DR+ +TSF+ P GGGDPIL+
Sbjct: 175 MGALFFMSLNPMLIWTLFGTSILLVTSVPVLAAGLTLLLLDRHFSTSFYYPEGGGDPILW 234
Query: 546 QHLF*FFGHPEVYILILPGFGIISHII 626
QHLF FFGHPEVYILILP FG+ISHI+
Sbjct: 235 QHLFWFFGHPEVYILILPAFGVISHIL 261
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 146 bits (353), Expect = 5e-34
Identities = 77/207 (37%), Positives = 104/207 (50%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
Q+YN+++T H N ++PL+LGAP++AFPR+N + F
Sbjct: 63 QVYNSVLTMHGVLMIFFLVMPILIGGFGNWMLPLMLGAPEMAFPRVNALSFWFTFVALLM 122
Query: 186 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 365
+ G G+ T YPPLS S+D I LH GI S
Sbjct: 123 VYQSFFIGGGPGSSWTFYPPLSVE-GQPELSLDTMILGLHTVGIGSLLGAINFMVTTQNM 181
Query: 366 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 545
+ DQ+ +FV +T+F AG++ LL DRN NTSF+D GG+P+LY
Sbjct: 182 RSTAVTLDQISMFVWTSYLTSFLLVLSVPVLAGSLLFLLLDRNFNTSFYDTKKGGNPLLY 241
Query: 546 QHLF*FFGHPEVYILILPGFGIISHII 626
QHLF FFGHPEVY++ILP FGIIS +
Sbjct: 242 QHLFWFFGHPEVYVIILPVFGIISEAV 268
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 142 bits (344), Expect = 6e-33
Identities = 80/202 (39%), Positives = 110/202 (54%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 70 QLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLF 129
Query: 186 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 365
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 130 AVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINM 189
Query: 366 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 545
+ +LPLFV +V ITA A +T+LL DRN NTSFF +GGGDP+LY
Sbjct: 190 RANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLY 249
Query: 546 QHLF*FFGHPEVYILILPGFGI 611
+H+ F+ +P V ILI GI
Sbjct: 250 EHI--FYKNP-VLILIWLTSGI 268
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 138 bits (335), Expect = 8e-32
Identities = 76/208 (36%), Positives = 106/208 (50%), Gaps = 1/208 (0%)
Frame = +3
Query: 9 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 188
+YN I T H N +P++ G+P++A+PRIN+I
Sbjct: 58 LYNMIFTIHGIIMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLV 117
Query: 189 XXXXIVENGAGTG*TVYPPLSSNIAHRGR-SVDLAIFSLHLAGISSXXXXXXXXXXXXXX 365
E G GTG T+YPPLS+++ +VD+ IF L ++G++S
Sbjct: 118 ILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIFGLLVSGVASIMSSLNFITTVMHL 177
Query: 366 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 545
+ L + ++ IT+ G + +LL+D + NT FFDP GDPILY
Sbjct: 178 RAKGLTLGILSVSTWSLIITSGMLLLTLPVLTGGVLMLLSDLHFNTLFFDPTFAGDPILY 237
Query: 546 QHLF*FFGHPEVYILILPGFGIISHIIS 629
QHLF FFGHPEVYILILP FG+ISH+IS
Sbjct: 238 QHLFWFFGHPEVYILILPAFGVISHVIS 265
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 130 bits (314), Expect = 3e-29
Identities = 71/208 (34%), Positives = 103/208 (49%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
+IYN + T H N L P++LG D+ +PR+N
Sbjct: 60 EIYNLLFTLHGLIMVFFNIMTGLFGGIGNYLYPVLLGYCDVVYPRVNLYSLLFQPIGFVL 119
Query: 186 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 365
+E G+GTG T+YPPLS+++++ G +D IF L AGI+S
Sbjct: 120 VVSSIYLEIGSGTGWTLYPPLSTSLSNVG--IDFIIFGLLAAGIASTLSSVNFITTFTSV 177
Query: 366 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 545
D++ ++ +T+F ++ DR+ NT FF+ + GDP+LY
Sbjct: 178 KTIGFVIDRISPAAWSIVLTSFLLLLSLPVVTAVFLMVFLDRHYNTMFFESSNSGDPVLY 237
Query: 546 QHLF*FFGHPEVYILILPGFGIISHIIS 629
QHLF FFGHPEVYI+ILPGFGIIS ++S
Sbjct: 238 QHLFWFFGHPEVYIMILPGFGIISLLLS 265
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 130 bits (313), Expect = 4e-29
Identities = 79/205 (38%), Positives = 99/205 (48%)
Frame = +3
Query: 9 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 188
+YN +VT H N +P+ L D+ PR+N++
Sbjct: 151 VYNYLVTNHGVAMIFFFLMPILIGGFGNYFLPIFLCLDDLLLPRLNSLSLWLMVPSIFYM 210
Query: 189 XXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 368
G G G T+YPPLS G VD +FSLHLAG+SS
Sbjct: 211 ELSLYY--GCGIGWTLYPPLSI-WEGSGFGVDYLMFSLHLAGVSSLIGSVNFISTIFSRL 267
Query: 369 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQ 548
S + V A T+ A IT+LL DRN T+FF+P+GGGDPIL+Q
Sbjct: 268 SFNCS-----IIVWAYLFTSVLLLLSLPVLASGITMLLFDRNFGTAFFEPSGGGDPILFQ 322
Query: 549 HLF*FFGHPEVYILILPGFGIISHI 623
HLF FFGHPEVY+LILPGFGI+SHI
Sbjct: 323 HLFWFFGHPEVYVLILPGFGIVSHI 347
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 117 bits (282), Expect = 2e-25
Identities = 73/206 (35%), Positives = 99/206 (48%)
Frame = +3
Query: 9 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 188
+YN VT H N L+P PD+ FPR+N + F
Sbjct: 48 VYNAFVTLHGLVMVFFAAMPTAIGFFANLLIPYHCNLPDLLFPRMNALSFWLMPFSLSL- 106
Query: 189 XXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 368
++ + A G T YPPLSS SV+ ++FSLHLAGI+S
Sbjct: 107 ----LLFSMASAGWTFYPPLSS----LSPSVEFSVFSLHLAGIASLISSCNFLVTMLATR 158
Query: 369 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQ 548
+ L LF ++ + + A IT++LTD++L T F+D GGDP+LYQ
Sbjct: 159 TSL--WYSLSLFCWSIVLVSLLLVLSLPVLAVGITLILTDKHLGTCFYDATMGGDPLLYQ 216
Query: 549 HLF*FFGHPEVYILILPGFGIISHII 626
HLF FFGHPEVY++ILP FG+ S I
Sbjct: 217 HLFWFFGHPEVYVVILPVFGLFSSSI 242
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 117 bits (281), Expect = 3e-25
Identities = 70/212 (33%), Positives = 96/212 (45%), Gaps = 6/212 (2%)
Frame = +3
Query: 12 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 191
Y I T H N L+PL++GA D+AFPR+N F
Sbjct: 86 YQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVL 145
Query: 192 XXXIVENG-AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 368
G AG G T Y PLS+N+ G L + ++ + G+SS
Sbjct: 146 ASFFAPLGSAGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLR 205
Query: 369 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA-----GGGD 533
++ +LPL + + +TA A +LL DR+ T FF GGGD
Sbjct: 206 APGMTYMRLPLTIWGLWLTAILNALFVPVLGSAALLLLLDRSFGTEFFVAGASAVRGGGD 265
Query: 534 PILYQHLF*FFGHPEVYILILPGFGIISHIIS 629
PIL+QHLF FGHPEVYI+ILP +GI+ ++S
Sbjct: 266 PILWQHLFWIFGHPEVYIMILPAWGILGDVLS 297
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 115 bits (276), Expect = 1e-24
Identities = 66/209 (31%), Positives = 104/209 (49%), Gaps = 2/209 (0%)
Frame = +3
Query: 9 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 188
IYN +T H N L+P+++G +++ PR+N I F
Sbjct: 63 IYNNWITIHGLIMLFVFIMPVGIGFYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIF 122
Query: 189 XXXXIV-ENGAGTG*TVYPPLSSNIAHR-GRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 362
++ +G T+YPPLS+ A G ++DL++ +H+ GISS
Sbjct: 123 VISNVLMSKPISSGWTLYPPLSTRDADNIGVNIDLSLLVVHVLGISSTIGSVNYITTNKY 182
Query: 363 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPIL 542
+F + ++ ++ +T+ AIT LL DRN+N++ +D G DP+L
Sbjct: 183 NRHVGLTFMNINIYNFSIIVTSILLIGSLPILGVAITGLLLDRNINSTIYDVIG--DPVL 240
Query: 543 YQHLF*FFGHPEVYILILPGFGIISHIIS 629
YQHLF FFGHPEVY++ILP FG+ S I++
Sbjct: 241 YQHLFWFFGHPEVYVIILPVFGLTSLILT 269
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 114 bits (275), Expect = 1e-24
Identities = 66/179 (36%), Positives = 87/179 (48%)
Frame = +3
Query: 90 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 269
N VPL++GA D+AFPR+N+ F + + G Y PLSS
Sbjct: 99 NYFVPLMIGARDVAFPRLNSFGFWMFFFGAALLHFSFLTGSAPNAGWFSYVPLSSKAYSS 158
Query: 270 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 449
+ VD I L + GI S S ++PLFV + + A
Sbjct: 159 LQGVDYWIIGLLIMGIGSVSGAINIFATIINLRAPGMSLQRVPLFVWMMLMQAILIILAL 218
Query: 450 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 626
A+ +LL DR L ++FFDP GG +L+QH F FGHPEVYILILPGFG+IS +I
Sbjct: 219 PALNSALAMLLIDRWLGSAFFDPTRGGSAVLWQHYFWIFGHPEVYILILPGFGMISEVI 277
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 114 bits (274), Expect = 2e-24
Identities = 65/153 (42%), Positives = 78/153 (50%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
Q+YN I+TAHA N LVP+++GAPD+AFPR+NNI F
Sbjct: 52 QLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLIL 111
Query: 186 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 365
VE GAGTG TVYPPLS +H G SVDLAIFSLHL+GISS
Sbjct: 112 LLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNM 171
Query: 366 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 464
+ +LPLFV A+ +TA AG
Sbjct: 172 RNPGMTLHKLPLFVWAIFVTAILLLLSLPVLAG 204
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 111 bits (266), Expect = 2e-23
Identities = 71/207 (34%), Positives = 94/207 (45%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
++YN ++T H N L+PL++G D+AFPR+N + F
Sbjct: 67 EMYNQLMTLHGTIMIFLWIVPAGAAFA-NYLIPLMVGTEDMAFPRLNAVAFWLTPPGGIL 125
Query: 186 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 365
V G T YPPLS G +L I SL L G SS
Sbjct: 126 LISSFFV-GAPQAGWTSYPPLSLLSGKWGE--ELWILSLLLVGTSSILGAINFVTTILKM 182
Query: 366 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 545
+PLF A+ T+ A A+ +L D TSFF+P GGGDP++Y
Sbjct: 183 RIKDMDLHSMPLFCWAMLATSSLILLSTPVLASALILLSFDLIAGTSFFNPVGGGDPVVY 242
Query: 546 QHLF*FFGHPEVYILILPGFGIISHII 626
QHLF F+ HP VYI+ILP FG+IS +I
Sbjct: 243 QHLFWFYSHPAVYIMILPFFGVISEVI 269
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 110 bits (264), Expect = 3e-23
Identities = 67/205 (32%), Positives = 94/205 (45%)
Frame = +3
Query: 12 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 191
YN ++T H N L+PL++GA D+AFPR+N + +
Sbjct: 12 YNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWWAFFAANVLFL 71
Query: 192 XXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXX 371
I N T T YPP S N + L +F +HL G SS
Sbjct: 72 MTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVNFLVTYITMRA 129
Query: 372 XXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 551
+F + LFV + AGA+T+L D+ L T+FF+PA GGDP++YQ+
Sbjct: 130 PGYTFFKTNLFVHTLIAANVIQLVGVPSLAGAVTMLFLDKYLGTNFFNPAKGGDPLIYQN 189
Query: 552 LF*FFGHPEVYILILPGFGIISHII 626
+F F+ HP VY+ +LP FG S II
Sbjct: 190 IFWFYSHPVVYVQVLPVFGFYSEII 214
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 108 bits (259), Expect = 1e-22
Identities = 61/178 (34%), Positives = 87/178 (48%)
Frame = +3
Query: 96 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 275
LVPL++G IAFPR+N + V+ G G Y PLS G+
Sbjct: 98 LVPLMVGTRHIAFPRLNAFSYWMYLAGGLLLWIAFAVDTGPDIGWFAYVPLSGPQYAAGK 157
Query: 276 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 455
D+ + +S+ S D++PLFV ++ +T+F
Sbjct: 158 RADIWAQMITFTEVSALAIAVEIVVTVFKQRAPGMSLDRIPLFVWSMLVTSFLVILAMPA 217
Query: 456 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 629
A T L+ DR + T FF+PA GGD +L+QHLF FFGHPEVYI+ LP G++S I++
Sbjct: 218 IMIASTSLILDRLVGTHFFNPAEGGDVLLWQHLFWFFGHPEVYIIFLPAVGMVSSIVA 275
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 107 bits (258), Expect = 2e-22
Identities = 79/213 (37%), Positives = 103/213 (48%), Gaps = 8/213 (3%)
Frame = +3
Query: 12 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 191
YN+++T+H N L+PL++GA D+AFPRIN I F
Sbjct: 136 YNSLLTSHGITMLFLFATPIIAAFS-NYLIPLLIGADDMAFPRINAIAFWLLPPAALLIW 194
Query: 192 XXX--IVEN-GAGTG*TVYPPLS-----SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXX 347
I E A TG T+Y PLS N A+ G VDL + LHL+G+S+
Sbjct: 195 AGFFPIPEVIPAQTGWTMYTPLSVGEGMGNQANAG--VDLMLLGLHLSGVSATMGSINFI 252
Query: 348 XXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGG 527
S+ L +F + + AI +LL DRN TSFF AG
Sbjct: 253 ATIFTERGKNVSWANLDIFSWTILTQSGLILFAFPLLGSAIMMLLFDRNFGTSFF--AGE 310
Query: 528 GDPILYQHLF*FFGHPEVYILILPGFGIISHII 626
G IL+QHLF FFGHPEVYI++LP GIIS+I+
Sbjct: 311 GGAILWQHLFWFFGHPEVYIIVLPPMGIISYIL 343
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 105 bits (252), Expect = 9e-22
Identities = 65/207 (31%), Positives = 95/207 (45%), Gaps = 1/207 (0%)
Frame = +3
Query: 12 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 191
YN T H N ++PL+LGA D+AFPR+N +
Sbjct: 84 YNRTFTLHGLVMIFLFMIPAIPAVFGNFMLPLMLGAKDVAFPRLNLLSLYIYLAGAVLAL 143
Query: 192 XXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXX 371
++ G TG T Y P S AH +V +F + G SS
Sbjct: 144 WG-MLNGGLDTGWTFYTPYS---AHTTTTVAPVLFGAFIIGFSSIVTGINFIVTCHTMRA 199
Query: 372 XXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL-NTSFFDPAGGGDPILYQ 548
++ ++PLFV A+ T+ G + +L+T NL FDPA GGDP+L+Q
Sbjct: 200 PGITWFKMPLFVWAIYATS-CIQVLATPVIGLLLVLVTVENLFGFGMFDPARGGDPVLFQ 258
Query: 549 HLF*FFGHPEVYILILPGFGIISHIIS 629
HLF F+ HP VYI++LP FG++S +++
Sbjct: 259 HLFWFYSHPAVYIMVLPSFGVMSEVVA 285
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 105 bits (251), Expect = 1e-21
Identities = 61/181 (33%), Positives = 85/181 (46%), Gaps = 3/181 (1%)
Frame = +3
Query: 90 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLS--SNI 260
N L+P ++GAPD+AFP++N F G A +G YPP+S + +
Sbjct: 103 NLLIPTMIGAPDMAFPKLNAAAFWLVPVFSIVLMGSFFAPGGPASSGWWSYPPMSLQNPL 162
Query: 261 AHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXX 440
H L I ++ L+GISS F ++P+FV
Sbjct: 163 GHFINGEFLWILAVALSGISSIMGAINFVTTIIRMRAPGMGFFRMPVFVWTAWAAQTIQL 222
Query: 441 XXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISH 620
G +LL D + TSFF P GGGDP+L+QH F F+ HP VY+L+LP FGI S
Sbjct: 223 IGLPALTGGAVMLLFDLSFGTSFFRPEGGGDPVLFQHFFWFYSHPAVYVLVLPVFGIFSE 282
Query: 621 I 623
+
Sbjct: 283 L 283
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 105 bits (251), Expect = 1e-21
Identities = 63/179 (35%), Positives = 83/179 (46%)
Frame = +3
Query: 90 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 269
N +VPL++GA D+AFPR+N + V G Y PL+
Sbjct: 98 NYMVPLMIGARDMAFPRLNALSIWLFIFGGLMLYVSFFVGGAPNVGWFAYAPLTQKQFAP 157
Query: 270 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 449
VD I + L G++S + +++PLFV + AF
Sbjct: 158 TAGVDYWIVGIGLTGVASIAGALNFIVTILNMRAPGMTLNRMPLFVWMQLVVAFILIFAF 217
Query: 450 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 626
A LL DR+ T FF P GGD +L+QHLF FFGHPEVYILILP GIIS ++
Sbjct: 218 PVLTVATIQLLFDRHFGTRFFLPNLGGDAVLWQHLFWFFGHPEVYILILPTMGIISEVL 276
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 104 bits (250), Expect = 2e-21
Identities = 67/208 (32%), Positives = 97/208 (46%), Gaps = 2/208 (0%)
Frame = +3
Query: 9 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 188
+YN ++T+H N +PL++ A D+AFPRIN I F
Sbjct: 109 LYNGLLTSHGITMLFLFGTPMIAAFG-NYFIPLLIDADDMAFPRINAIAFWLLPPGAILI 167
Query: 189 XXXXIVEN--GAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 362
++ A T T+Y PLS ++ +VD+ + LHL G+S+
Sbjct: 168 WSGFLIPGIATAQTSWTMYTPLSLQMS--SPAVDMMMLGLHLTGVSATMGAINFIATIFT 225
Query: 363 XXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPIL 542
+ L +F + + A+ +LL DRN T+FF AGG DPI
Sbjct: 226 ERGEDVGWPDLDIFSWTMLTQSGLILFAFPLFGSALIMLLLDRNFGTTFFTVAGG-DPIF 284
Query: 543 YQHLF*FFGHPEVYILILPGFGIISHII 626
+QHLF FFGHPEVY+L+LP GI+S I+
Sbjct: 285 WQHLFWFFGHPEVYVLVLPPMGIVSLIL 312
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 103 bits (246), Expect = 5e-21
Identities = 63/185 (34%), Positives = 89/185 (48%), Gaps = 6/185 (3%)
Frame = +3
Query: 90 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAH 266
N LVP ++GAPD+ +PRIN + F + ++G G T+YPPLS+
Sbjct: 86 NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTLYPPLST--IS 143
Query: 267 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 446
+ VDL + + +AG SS + LF +V +
Sbjct: 144 KSIGVDLILLGIIIAGFSSTLTGINFILTITRLRRPDIKMLDMSLFAWSVLAASMLMVTA 203
Query: 447 XXXXAGAITILLTDRNLNTSFF-----DPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 611
A +LL +R+L FF DPA GDP L+QH+F FFGHPEVYIL+LP G+
Sbjct: 204 LPPLAAGAIMLLLERHLGMHFFTPVPGDPAASGDPRLFQHIFWFFGHPEVYILVLPAMGL 263
Query: 612 ISHII 626
+S +I
Sbjct: 264 VSEVI 268
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 102 bits (244), Expect = 8e-21
Identities = 62/180 (34%), Positives = 84/180 (46%), Gaps = 1/180 (0%)
Frame = +3
Query: 90 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT-G*TVYPPLSSNIAH 266
N ++PL +GAPD+AFPR+N F + GA G T+Y PLS I
Sbjct: 105 NYVLPLQIGAPDVAFPRLNAFGFWITTVGGVAMLTGFLTPGGAADFGWTMYSPLSDAIHS 164
Query: 267 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 446
G D+ I + GI S + ++P+F + + +
Sbjct: 165 PGLGSDMWIVGVGATGIGSVASAINMLTTILCLRAPGMTMFRMPIFTWNIFVVSVLALLI 224
Query: 447 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 626
A +L DR L +DPA GG +L+QHLF FFGHPEVY+L LP FGI+S II
Sbjct: 225 FPLLLAAALGVLYDRKLGGHLYDPANGGS-LLWQHLFWFFGHPEVYVLALPFFGIVSEII 283
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 100 bits (240), Expect = 2e-20
Identities = 61/182 (33%), Positives = 89/182 (48%), Gaps = 2/182 (1%)
Frame = +3
Query: 90 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAH 266
N +VPL +GA D+AFPR+N + + E+GA G T+Y PL++ I
Sbjct: 88 NYIVPLQIGARDLAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVGWTLYAPLTARIYT 147
Query: 267 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 446
G +DLA ++ L +S + ++P+F ++ T
Sbjct: 148 PGIGLDLAALAIFLFSLSVTLGTINFLVTIAAMRAPGIGWFKMPMFTWSILFTVILMLWA 207
Query: 447 XXXXAGAITILLTDRNLNTSFF-DPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHI 623
+LL DRNL T FF +PAGG +L+ HLF FFGHPEVYIL+ P G ++ +
Sbjct: 208 FPPLMVGGALLLLDRNLGTEFFLNPAGGA--LLWDHLFWFFGHPEVYILLFPALGAMADV 265
Query: 624 IS 629
IS
Sbjct: 266 IS 267
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 99.5 bits (237), Expect = 6e-20
Identities = 67/223 (30%), Positives = 99/223 (44%), Gaps = 15/223 (6%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
+ Y +VT HA N L+PL++GA D+AFP +N + +
Sbjct: 86 EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFF 145
Query: 186 XXXXXIVE-NGAGTG*TVYPPLS---SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXX 353
+ +GA G T YPPLS ++ G + L + + G+SS
Sbjct: 146 FGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTT 205
Query: 354 XXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP----- 518
+ +LPL + A+ ITA A ++L DR + T FF P
Sbjct: 206 IIQMRAPGMTMFRLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGTGFFLPEGLVV 265
Query: 519 ------AGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 629
AGGG P+L+QHLF F+ HP VYI+ILP G++S I++
Sbjct: 266 NNSPMAAGGGQPLLWQHLFWFYSHPAVYIMILPAMGMVSDILA 308
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 99.1 bits (236), Expect = 8e-20
Identities = 59/205 (28%), Positives = 90/205 (43%)
Frame = +3
Query: 12 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 191
YN + T H N L+P+++GA D+AFP++N + F
Sbjct: 77 YNRMFTLHGVVMIFLFMIPAIPSGFGNFLLPIMIGAKDVAFPKLNLLSFYVYLAGAVVAL 136
Query: 192 XXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXX 371
+V+ GA TG T Y P S+ + V L F L G SS
Sbjct: 137 FG-MVQGGADTGWTFYTPYSTTTITKVVPVLLGAFIL---GFSSILTGLNFIVTTHTMRA 192
Query: 372 XXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 551
+ +LPLFV ++ T+ ++ ++ + FDPA GGDP+L+QH
Sbjct: 193 PGMGWTRLPLFVWSIYATSVIQILATPVLGMSLLLVAVEHAFGWGIFDPARGGDPVLFQH 252
Query: 552 LF*FFGHPEVYILILPGFGIISHII 626
F F+ HP VYI++LP +IS ++
Sbjct: 253 FFWFYSHPAVYIMVLPAMAVISEVV 277
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 98.3 bits (234), Expect = 1e-19
Identities = 57/207 (27%), Positives = 91/207 (43%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
Q YN ++T H N +VPL +GA D++FP +N + F
Sbjct: 64 QAYNEVMTMHGTTMIFLAAMPLLFALM-NAVVPLQIGARDVSFPFLNALGFWLFFFGHIF 122
Query: 186 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 365
+ G T Y LS + +G +D + L ++G+ +
Sbjct: 123 LNLSWFLGGAPDAGWTSYASLS--LHSKGHGIDFFVLGLQISGLGTLIAGINFLATIINM 180
Query: 366 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILY 545
++ +LPLF + + + +++ DR T+FF+P GG+ +++
Sbjct: 181 RAPGMTYMRLPLFTWTTFVASALILFAFPPLTVGLALMMLDRLFGTNFFNPELGGNTVIW 240
Query: 546 QHLF*FFGHPEVYILILPGFGIISHII 626
+HLF FGHPEVYILILP FGI S +I
Sbjct: 241 EHLFWIFGHPEVYILILPAFGIFSEVI 267
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 97.9 bits (233), Expect = 2e-19
Identities = 63/206 (30%), Positives = 86/206 (41%)
Frame = +3
Query: 12 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 191
YN I T H N +VPL +GA D+AFP +NN+ F
Sbjct: 95 YNEIFTTHGTIMIIFMAMPFLIGLI-NVVVPLQIGARDVAFPYLNNLSFWTFFVGAMLFN 153
Query: 192 XXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXX 371
++ G T Y PL+SN G + + L +AGI +
Sbjct: 154 ISFVIGGSPNAGWTSYMPLASNDMSPGPGENYYLLGLQIAGIGTLMTGINFMVTILKMRT 213
Query: 372 XXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 551
+ ++P+F IT A+ +L DR FF GG P+L+ +
Sbjct: 214 KGMTLMRMPMFTWTTLITMVIIVFAFPVLTVALALLSFDRLFGAHFFTLEAGGMPMLWAN 273
Query: 552 LF*FFGHPEVYILILPGFGIISHIIS 629
LF +GHPEVYI+ILP FGI S IIS
Sbjct: 274 LFWIWGHPEVYIVILPAFGIFSEIIS 299
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 94.7 bits (225), Expect = 2e-18
Identities = 59/207 (28%), Positives = 89/207 (42%), Gaps = 1/207 (0%)
Frame = +3
Query: 12 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 191
YN I+T H N +VPL+LGA D+A PR+N +
Sbjct: 66 YNQILTLHGATMLFFFIIQAGLTGFGNFVVPLMLGARDVALPRVNAFSYWAFLGAIVLAL 125
Query: 192 XXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 368
GA G T Y P S A VD + ++ L G SS
Sbjct: 126 MSYFFPGGAPSVGWTFYYPFS---AQSESGVDFYLAAILLLGFSSLLGNANFVATIYNLR 182
Query: 369 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQ 548
S ++P++V +V + A ++L +R + S+F+PA GGDP+L+Q
Sbjct: 183 AQGMSLWKMPIYVWSVFAASVLNLFSLAGLTAATLLVLLERKIGLSWFNPAVGGDPVLFQ 242
Query: 549 HLF*FFGHPEVYILILPGFGIISHIIS 629
F F+ HP VY+++LP GI++ + S
Sbjct: 243 QFFWFYSHPTVYVMLLPYLGILAEVAS 269
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 92.7 bits (220), Expect = 7e-18
Identities = 57/180 (31%), Positives = 82/180 (45%)
Frame = +3
Query: 90 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 269
N +VPL +GA D+AFP +N++ F V N A TG YPPL+
Sbjct: 125 NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVNLSLGVGNFARTGWVAYPPLAELGFSP 184
Query: 270 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 449
VD I++L ++GI + +P+F
Sbjct: 185 DVGVDYYIWALQISGIGTTLTAINFLVTVIKMRAPGMKLMDMPIFTWTCTWANVLIATSF 244
Query: 450 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 629
GA+ +L DR L+ FF GG+ ++Y +LF +GHPEVYIL+LP FGI S ++S
Sbjct: 245 PILTGALAMLALDRYLDFHFFTAELGGNAMMYLNLFWAWGHPEVYILVLPAFGIFSEVVS 304
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 91.1 bits (216), Expect = 2e-17
Identities = 55/177 (31%), Positives = 79/177 (44%)
Frame = +3
Query: 96 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 275
++PL+LG D+ FPR+N + ++ G YPPL+ G
Sbjct: 105 IIPLMLGTRDMTFPRLNAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGL 164
Query: 276 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 455
+D + IS+ S +++P+FV AV + +F
Sbjct: 165 GLDFYTTVVTFMEISALVAAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSFMIVFALPP 224
Query: 456 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 626
A +L DR FF A GDPIL+QHLF FFGHPEVYI+ +P G++S II
Sbjct: 225 LVIASLMLALDRMAGMHFFT-AASGDPILWQHLFWFFGHPEVYIIFIPALGMVSSII 280
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 90.2 bits (214), Expect = 4e-17
Identities = 69/220 (31%), Positives = 93/220 (42%), Gaps = 14/220 (6%)
Frame = +3
Query: 12 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 191
Y +T H N L+PL++GA D+ FP +N + +
Sbjct: 81 YLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMVFPYVNMLSYWVYLLAVLVLA 140
Query: 192 XXXIVENG-AGTG*TVYPP--LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXX 362
V G G G T+YPP + S + + L + SL L I
Sbjct: 141 SAFFVPGGPTGAGWTLYPPQAILSGTPGQDWGIVLMLSSLILFIIGFTMGGLNYVVTVLQ 200
Query: 363 XXXXXXSFDQLPLFV*AV-GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA------ 521
+ +LPL V + T G++ +LL DR L TSFF P
Sbjct: 201 ARTRGMTLMRLPLTVWGIFTATVMALLAFPALFVGSVMLLL-DRLLGTSFFMPTLVEMGQ 259
Query: 522 ----GGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 629
GGG P+L+QHLF FFGHPEVYI+ LP FGI+S +IS
Sbjct: 260 LSKYGGGSPLLFQHLFWFFGHPEVYIVALPAFGIVSDLIS 299
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 89.8 bits (213), Expect = 5e-17
Identities = 52/177 (29%), Positives = 81/177 (45%)
Frame = +3
Query: 96 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 275
L+PL++GA D+ FPR+ + + + G +Y PLS++ G
Sbjct: 124 LIPLMIGARDLVFPRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFMYVPLSTSAYTEGL 183
Query: 276 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 455
S D + + LA I+S S ++P+ + + TAF
Sbjct: 184 SADFWLIGITLAEIASVTAAVEIIAAILCSRAPGMSLTKMPILMWYLLATAFMIAIAFPP 243
Query: 456 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 626
+L +R L FFD GGDP+L+QHLF FGHPEVYI+ LP G+++ ++
Sbjct: 244 LIIGSILLEAERLLGLPFFDHTLGGDPLLWQHLFWLFGHPEVYIIFLPAAGMVATML 300
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 89.8 bits (213), Expect = 5e-17
Identities = 56/180 (31%), Positives = 79/180 (43%)
Frame = +3
Query: 90 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 269
N VPL +GA D+AFP +N++ F V A TG YPPL+
Sbjct: 124 NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVNISLGVGEFAKTGWVAYPPLAGIQYSP 183
Query: 270 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 449
G VD I++L L+G+ + +P+F
Sbjct: 184 GVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRAPGMKLMDMPIFTWTCTWANVLIVASF 243
Query: 450 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 629
A+ +L DR L+ F GG+P++Y +LF +GHPEVYILILP FG+ S + S
Sbjct: 244 PILTAALALLTVDRYLDFHIFTNELGGNPMMYVNLFWAWGHPEVYILILPAFGVFSEVTS 303
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 88.6 bits (210), Expect = 1e-16
Identities = 67/222 (30%), Positives = 97/222 (43%), Gaps = 14/222 (6%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
+ Y +VT H N L+PL +GA D+A +N + +
Sbjct: 100 EFYLALVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDMASGFMNMLSYWFFFGSSVI 159
Query: 186 XXXXXIVENGAGTG*-TVYPPLSS---NIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXX 353
+E G +G +YPPLS+ ++ G + + + S+ L IS
Sbjct: 160 MFASIFLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLISMALFIISVLLGGINYITT 219
Query: 354 XXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP----A 521
SF +LPL + A ITA A +L+ DR+L TSFF A
Sbjct: 220 VINLRVKGMSFTRLPLTIWAFFITAIIGLLSFPVLFSAALLLIFDRSLGTSFFLSEIYIA 279
Query: 522 G------GGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 629
G GG P+L+QHLF F GHPEVYI+++P GI S +I+
Sbjct: 280 GEALHHQGGSPVLFQHLFWFLGHPEVYIVLIPALGITSEVIA 321
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 87.0 bits (206), Expect = 3e-16
Identities = 53/177 (29%), Positives = 77/177 (43%)
Frame = +3
Query: 96 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 275
L+P +LG+ D+AFPR+ F + +G +YPPLSS + G
Sbjct: 98 LLPKLLGSRDLAFPRLTAYGFWCYVFGGSMMIFSLLWGIAPDSGWFMYPPLSSTLGAPGI 157
Query: 276 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 455
+ D + + IS+ S ++P+F +TA
Sbjct: 158 NSDFWLIGITFVEISAIAAAVEITVTVLRYRAPGMSLSKMPIFAWYALVTAVMILTGFPP 217
Query: 456 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 626
+L +R + FF A GGD +L+QHLF FGHPEVYI+ LP G IS I+
Sbjct: 218 LILGSILLELERAFDMPFFQAAAGGDALLWQHLFWLFGHPEVYIIFLPAAGAISTIL 274
>UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7;
Echinoida|Rep: Cytochrome c oxidase subunit I -
Echinometra oblonga
Length = 386
Score = 87.0 bits (206), Expect = 3e-16
Identities = 37/46 (80%), Positives = 42/46 (91%)
Frame = +3
Query: 492 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 629
N T+FFDPAGGGD IL+QHLF FFGHPEVYILILPGFG+ISH+I+
Sbjct: 191 NYYTTFFDPAGGGDXILFQHLFXFFGHPEVYILILPGFGMISHVIA 236
>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
Sulfolobus acidocaldarius
Length = 788
Score = 86.6 bits (205), Expect = 4e-16
Identities = 57/180 (31%), Positives = 82/180 (45%), Gaps = 1/180 (0%)
Frame = +3
Query: 90 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS-SNIAH 266
N LVP ++GA D+ +P+IN + F ++ G +Y PLS +
Sbjct: 80 NYLVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGWYMYAPLSVETTVN 138
Query: 267 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 446
G +L +L L+G+SS + ++PLFV TA
Sbjct: 139 YGLGTNLIQIALILSGLSSTLTGVNFVMTITKMKKVP--YLKMPLFVWGFFTTAILMIIA 196
Query: 447 XXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 626
+ +R T FFD A GG P+L+Q LF FFGHPEVYILILP G++S ++
Sbjct: 197 MPSLTAGLVFAYLERLWGTPFFDSALGGSPVLWQQLFWFFGHPEVYILILPAMGLVSELL 256
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 86.2 bits (204), Expect = 6e-16
Identities = 55/176 (31%), Positives = 78/176 (44%)
Frame = +3
Query: 90 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 269
N L PL+LG+ D+AFPR+ + + G Y PL+S
Sbjct: 116 NYLWPLMLGSRDMAFPRLTAFSYWSFLFAGLFLYASFPLGAVPDGGWFNYVPLTSLDYSA 175
Query: 270 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 449
G ++D+ + L GIS+ S D+LP+ V +
Sbjct: 176 GANIDIYGLGMILLGISTTGGAANFVVTLLRMRAHGMSIDRLPIIVWGTLTASVSNLVAV 235
Query: 450 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 617
+ A +L DRN T FFD A GG P+L+QHLF F HP VY+++LP GI+S
Sbjct: 236 PSVSLAFLLLWLDRNAGTHFFDVAHGGRPLLWQHLFWMFAHPWVYVVVLPAMGIVS 291
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 85.8 bits (203), Expect = 8e-16
Identities = 58/208 (27%), Positives = 89/208 (42%), Gaps = 1/208 (0%)
Frame = +3
Query: 9 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 188
+YNT + H N +PL++GA D+AFPR+N +
Sbjct: 56 VYNTWLYFHGAAMILAFQIPALTGFFANYFIPLMIGAKDVAFPRVNALSVWLFYAGVLVA 115
Query: 189 XXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 368
+ + T YPP S I H + FS+ L G +S
Sbjct: 116 LTTFFIPDPPDIMWTGYPPYSI-ITHGNTA--FYTFSVLLLGFASILGGVNFLTTVTFMR 172
Query: 369 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG-AITILLTDRNLNTSFFDPAGGGDPILY 545
+++L +FV A + AF G A+T+L D+ + T FFD A GGD + Y
Sbjct: 173 APGIGWNKLNIFVWAT-LAAFVLQLIFVPVLGTAVTMLTFDKYIGTHFFDAAAGGDALTY 231
Query: 546 QHLF*FFGHPEVYILILPGFGIISHIIS 629
Q+LF F+ HP VY++ LP ++ I++
Sbjct: 232 QNLFWFYSHPAVYVIFLPFMAMVFEIVA 259
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 85.0 bits (201), Expect = 1e-15
Identities = 56/183 (30%), Positives = 79/183 (43%), Gaps = 4/183 (2%)
Frame = +3
Query: 90 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAG----TG*TVYPPLSSN 257
N +PL++GA D+AFPR+N + ++ G G Y L+S
Sbjct: 96 NYFLPLMIGARDVAFPRLNAFSYWIYLFGALFINAGWLMGTAGGHVPDIGWFGYANLTSV 155
Query: 258 IAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXX 437
G D L L GI + + ++P+FV +T+
Sbjct: 156 QFTSGLGPDFWTLGLLLLGIGTLVSGFNFIVTILNMRAPGMTLMKMPVFVWTTLVTSAII 215
Query: 438 XXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 617
A+ +L+ DR +FF+ GG + YQHLF FGHPEVYILILP GIIS
Sbjct: 216 IFAFPSVTVALIMLMFDRTFAANFFEVLRGGSVVFYQHLFWTFGHPEVYILILPAMGIIS 275
Query: 618 HII 626
+I
Sbjct: 276 EVI 278
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 84.6 bits (200), Expect = 2e-15
Identities = 54/180 (30%), Positives = 80/180 (44%)
Frame = +3
Query: 90 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 269
N ++PL +G+ D+AFP +N + F I+ A TG YPPLS
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178
Query: 270 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 449
VD +S+ ++GI + F+++ +F+ +
Sbjct: 179 WVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISIFMWTCLCSNILILISF 238
Query: 450 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 629
+ + DR L+T F+ GG +LY +L +GHPEVYILILP FGI S IIS
Sbjct: 239 PILTILLFQIFLDRTLSTHFYSSFYGGQQMLYINLIWAWGHPEVYILILPSFGIFSEIIS 298
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 84.2 bits (199), Expect = 2e-15
Identities = 51/177 (28%), Positives = 78/177 (44%)
Frame = +3
Query: 96 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 275
L+P +LG+ D+A+PR++ F + +G +YPPL+S + G
Sbjct: 98 LLPKMLGSRDLAYPRLSAYGFWCYVLGGSMLIVALLAGIAPDSGWFMYPPLASTLGSPGI 157
Query: 276 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 455
+ D + + IS+ S D++P++ +TA
Sbjct: 158 NSDFWLLGITFVEISAIAAAVEIVVTVLRFRAPGMSLDRMPIYGWYALVTATMILTGFPP 217
Query: 456 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 626
+L +R FF A GGD +L+QHLF FGHPEVYI+ LP G IS I+
Sbjct: 218 LILGSILLELERAFGLPFFQVAEGGDSLLWQHLFWLFGHPEVYIIFLPAAGAISTIL 274
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 84.2 bits (199), Expect = 2e-15
Identities = 57/180 (31%), Positives = 77/180 (42%)
Frame = +3
Query: 90 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 269
N +VPL +GA D+AFP +N+I +V + G YPP + + +
Sbjct: 144 NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGWFGYPPYTETLYNP 203
Query: 270 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 449
G VD I+SL LA + S +PLF TA
Sbjct: 204 GIGVDYWIWSLTLASLGSTLTGINIAVTIYKKRAPGMKLYYMPLFTWTALCTAIMMIFAM 263
Query: 450 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 629
L DR L+ FF GG+ + + ++F FGHPEVYILILP FG+ S I S
Sbjct: 264 PPLTVVTLQLALDRYLDFHFFTNGLGGNQMNFLNMFWLFGHPEVYILILPAFGVYSEIFS 323
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 83.8 bits (198), Expect = 3e-15
Identities = 56/179 (31%), Positives = 83/179 (46%)
Frame = +3
Query: 90 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 269
N VP+++ D+A+P++N I F + T PP S I+
Sbjct: 88 NYFVPIMVRYKDMAYPKLNAIAFWMIPPAGALVWLGFADFSWYAT-----PPYSV-ISAP 141
Query: 270 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 449
G + D+ IF L + GISS S Q+PL + ++
Sbjct: 142 GPAADMWIFGLKILGISSILGSINFIVTILKCKHPDMSLGQVPLLAWSYLSSSLIVLVAL 201
Query: 450 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 626
A A+ +LLTDR + FF+PA GGDPI Y HLF F HPEVY+L++P G++ ++
Sbjct: 202 PTFAAALLMLLTDRLGVSGFFNPAVGGDPIAYAHLFWFTFHPEVYVLVIPAIGMMYEMV 260
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 82.6 bits (195), Expect = 7e-15
Identities = 51/177 (28%), Positives = 76/177 (42%)
Frame = +3
Query: 96 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 275
L+P +L A D+ FPR++ + G +YPPL+ G
Sbjct: 108 LLPQMLAARDLPFPRLSAFAIWAYIVGGLVFFSTVFYDLAPKGGWFMYPPLTLKEYSPGD 167
Query: 276 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 455
+ D + + IS+ S ++P+F A+ I A
Sbjct: 168 NADFWLLGIGFIEISAIAGAIEIIVGTLRTRPPGMSLTRMPIFAWAMLIFAAMIMIAFPA 227
Query: 456 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 626
A +L +R+ FF GGDP+L+QHLF FFGHPEVYI+ LP G++S I+
Sbjct: 228 VILATMLLEIERSFGWPFFTAERGGDPLLWQHLFWFFGHPEVYIIFLPAAGLVSMIV 284
>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 607
Score = 81.8 bits (193), Expect = 1e-14
Identities = 51/177 (28%), Positives = 78/177 (44%)
Frame = +3
Query: 96 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 275
L+P +LGA D+ FPR++ F V G + PPL++ G
Sbjct: 167 LLPNMLGARDLPFPRLSAYAFWAYLVGGLVFFASIFVGWAPDGGWFMNPPLTTETYSPGY 226
Query: 276 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 455
+ D + + IS+ + ++P+F A+ + A
Sbjct: 227 NADFWLLGIGFIEISAIAGAIEIIVGILRTRSPGMTLGRMPVFAWAMLVFALMIVFAFPA 286
Query: 456 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 626
A +L +R + FF GGDP+L+QHLF FFGHPEVYI+ LP G++S I+
Sbjct: 287 VILATALLELERAFHWPFFAAHLGGDPLLWQHLFWFFGHPEVYIIFLPAAGMVSMIV 343
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 81.8 bits (193), Expect = 1e-14
Identities = 50/137 (36%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Frame = +3
Query: 225 G*TVYPPLSSNIAHRG-RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ--L 395
G T P SSNI + G S D+ I S+ AGIS+ + +
Sbjct: 283 GWTFITPFSSNIKYTGVGSQDILILSVVFAGISTTISFTNLLITRRTLAMPGMRHRRVLM 342
Query: 396 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHP 575
P ++ +T A+ ++ DR+ T+FF+ A GGDPIL QHLF FFGHP
Sbjct: 343 PFVTISIFLTLRMLATITPVLGAAVIMMAFDRHWQTTFFEYAYGGDPILSQHLFWFFGHP 402
Query: 576 EVYILILPGFGIISHII 626
EVY+LI+P FG I+ I+
Sbjct: 403 EVYVLIIPTFGFINMIV 419
Score = 33.9 bits (74), Expect = 3.2
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 12 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 158
Y +VTAH N L+P +G+ D+A+PR+N+I F
Sbjct: 104 YLQVVTAHGLIMVFFVVVPILFGGFANFLIPYHVGSKDVAYPRLNSIGF 152
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 80.2 bits (189), Expect = 4e-14
Identities = 57/156 (36%), Positives = 68/156 (43%)
Frame = +3
Query: 96 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 275
L PL +GAP +A PR+ N+ F + G G VYPP SS +AH
Sbjct: 72 LXPLXVGAPXMAXPRLXNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYPPXSSGLAHSSG 131
Query: 276 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 455
+VDL IF LHLAGISS ++ LF
Sbjct: 132 AVDLGIFXLHLAGISSXLGSMNFLVTLGNMKXKGLNYGNFSLFCWXXVXXXXXLILSXPV 191
Query: 456 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 563
A AIT+L R N SFF P G P + F F
Sbjct: 192 LAAAITMLXXXRXXNXSFFXPXXXGXPXXFPTFFXF 227
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 80.2 bits (189), Expect = 4e-14
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = +3
Query: 105 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 284
L+LGAPD+AFPR+NN+ F +VENGAGTG TVYPPLSS AH G SVD
Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60
Query: 285 LAIFS 299
LAI+S
Sbjct: 61 LAIYS 65
Score = 59.7 bits (138), Expect = 6e-08
Identities = 29/56 (51%), Positives = 32/56 (57%)
Frame = +2
Query: 404 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWT 571
CM C +Y TCFS S+Y IIN K KY IF W P +STFILIFWT
Sbjct: 97 CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFWPNWSSSPYSLSTFILIFWT 152
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 79.8 bits (188), Expect = 5e-14
Identities = 57/222 (25%), Positives = 88/222 (39%), Gaps = 14/222 (6%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
+ Y + T HA N L+PL++GA D+AFP++N + +
Sbjct: 90 EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149
Query: 186 XXXXXIVENGAGTG*TVYP---PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 356
G G T YP L+ G + + + G SS
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTTI 209
Query: 357 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG---- 524
+F +LP+ + + ITA + + DR T FF P+G
Sbjct: 210 INMRAPGMTFFRLPMTIWGLFITAILQAFALPVLTAGGFMQVADRLFGTCFFYPSGLVIN 269
Query: 525 -------GGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 629
GG P+L+QHLF F+ HP VYI++LP G++S ++S
Sbjct: 270 NAAPTVGGGQPLLWQHLFWFYSHPAVYIMLLPIMGMVSDMLS 311
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 79.4 bits (187), Expect = 7e-14
Identities = 64/223 (28%), Positives = 93/223 (41%), Gaps = 16/223 (7%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
+ Y +++T H N +P+ +GA D+AFPR N + F
Sbjct: 84 EYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMSFWTTFAAFCV 143
Query: 186 XXXXXIVENGAG-TG*TVYPPLSS--NIAHRGRSVDLAIFSLHLA--GISSXXXXXXXXX 350
+ +G +G T Y LS+ A G + ++ + +A I+S
Sbjct: 144 LIAAFFIPDGPPISGWTAYATLSAVGGDAGPGMAYGQTLWGISIAIFCIASLLGSLNFIA 203
Query: 351 XXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG-- 524
S ++P+ A IT+ A +L DR TSFF P+G
Sbjct: 204 TTLDLRTKGMSLMRMPICTWAWFITSCIALLAFAVLLPACILLCLDRVAGTSFFIPSGLV 263
Query: 525 ---------GGDPILYQHLF*FFGHPEVYILILPGFGIISHII 626
GG +L+QHLF FFGHPEVYI ILP GI+SHI+
Sbjct: 264 FNDHVIPHGGGSALLWQHLFWFFGHPEVYIAILPAMGIVSHIL 306
>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
Rhodobacteraceae|Rep: Cytochrome c, monohaem -
Rhodobacter sphaeroides ATCC 17025
Length = 878
Score = 77.0 bits (181), Expect = 4e-13
Identities = 46/177 (25%), Positives = 75/177 (42%)
Frame = +3
Query: 96 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 275
L+P +LGA D+ FPR++ + + + +G +YPPL++ G
Sbjct: 126 LLPALLGARDLPFPRLSAYGYWCFLIGGVFVMGSILFDAAPKSGWFMYPPLATQ--DEGL 183
Query: 276 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 455
D+ + L ++S + +PL+ V +
Sbjct: 184 GSDIWLLGLSFIEVASIAAAVELIVGVLKCRPPGMRVNLMPLYAWYVLVVGGMILFAFPP 243
Query: 456 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 626
+ +R + FFDP GGDP+L+QHLF FGHPEVYI+ LP + + I+
Sbjct: 244 LIAGDLLFEMERGFDWPFFDPERGGDPLLWQHLFWIFGHPEVYIIFLPLIALAAMIV 300
>UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2;
Endopterygota|Rep: Cytochrome c oxidase subunit I -
Copitarsia incommoda
Length = 150
Score = 76.2 bits (179), Expect = 6e-13
Identities = 34/46 (73%), Positives = 35/46 (76%)
Frame = +2
Query: 491 KLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFTRIWYNFSYYF 628
K KYIIF S W F+STFILIFWT SLYFNFT IWYNFSYYF
Sbjct: 7 KFKYIIFWSSWSSWSYFMSTFILIFWTPSSLYFNFTSIWYNFSYYF 52
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 73.7 bits (173), Expect = 3e-12
Identities = 51/206 (24%), Positives = 77/206 (37%)
Frame = +3
Query: 12 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 191
YN ++T HA N +PL LG D+A PR+N
Sbjct: 74 YNQVLTMHAAIMLFFFLIPLGLFGFGNYFLPLQLGVRDVALPRLNTFAVWLFIASLILVV 133
Query: 192 XXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXX 371
G T Y PL+ + G SV + L+ G+ S
Sbjct: 134 LGLFNGGAPSVGWTFYYPLTMDGNQTGVSVFMVAVILN--GLGSLLGSANFAATIVNLRA 191
Query: 372 XXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 551
++P+F ++ T+ A + + L S F+P GG P+LYQ
Sbjct: 192 PGMGLWKMPVFAWSIFATSILQLLTLGGLTAAALLTYLEIKLGLSMFNPGIGGVPVLYQQ 251
Query: 552 LF*FFGHPEVYILILPGFGIISHIIS 629
F F+ HP VY+++LP GI + + S
Sbjct: 252 FFWFYSHPAVYVMLLPYLGIGAEVAS 277
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 73.7 bits (173), Expect = 3e-12
Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 1/179 (0%)
Frame = +3
Query: 96 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIAHRG 272
L+PL +G+ D+ +PR+N + + + G TG TVY PLSS
Sbjct: 111 LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGFFLPGGNLDTGWTVYEPLSSFKFTPY 170
Query: 273 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 452
D A ++ L GI + LPLFV AV A
Sbjct: 171 LGADTAAAAVVLRGIGTIIASTEILATIFKARAKGYRMMNLPLFVWAVFWVAAISWFVFP 230
Query: 453 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIIS 629
G +LL ++ S++ GG +++++LF +FGHPEVY+L+LPG G + +S
Sbjct: 231 EITGLFFLLLVGNLMHASYYISNYGG-ALMWENLFWYFGHPEVYLLLLPGTGAMFDYLS 288
>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
cryptum (strain JF-5)
Length = 689
Score = 72.9 bits (171), Expect = 6e-12
Identities = 50/179 (27%), Positives = 76/179 (42%)
Frame = +3
Query: 90 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 269
N +VPL +GA D+AFP +N + V + + G PL+
Sbjct: 143 NIIVPLQIGARDMAFPYLNAVGLWLTAVAAALVMLSLFVGDFSHDGWIGLIPLTELPYSP 202
Query: 270 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 449
G VD ++++ + + + ++ +LP V T
Sbjct: 203 GVGVDYWMWAIQIGSVGTTLNAINMIATIVKLRAPGMTWSRLPFVVWTSLTTNIIALTAF 262
Query: 450 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 626
A+ +L DR L T FF GG+ +LY +LF +GHPEVY ++LP FG IS II
Sbjct: 263 PILGVALAMLGADRYLGTHFFTAGLGGNLMLYTNLFWIWGHPEVYFVVLPAFGFISEII 321
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 70.9 bits (166), Expect = 2e-11
Identities = 40/83 (48%), Positives = 46/83 (55%)
Frame = +3
Query: 3 DQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXX 182
DQ N IVTAHA N LVPL++GAPD+AFPR+NN+ F
Sbjct: 52 DQXXNVIVTAHAFVMIFXMXMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFL 111
Query: 183 XXXXXXIVENGAGTG*TVYPPLS 251
VE GAGTG TVYPPL+
Sbjct: 112 LLLASSTVEAGAGTGWTVYPPLA 134
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 70.9 bits (166), Expect = 2e-11
Identities = 39/83 (46%), Positives = 48/83 (57%)
Frame = +3
Query: 243 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 422
PL+S+IAH G SVD+AIFSLHLAG+SS + D++PLF+ AV I
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131
Query: 423 TAFXXXXXXXXXAGAITILLTDR 491
T AGAIT+LLTDR
Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154
Score = 35.1 bits (77), Expect = 1.4
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +2
Query: 77 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKN 202
W IWKL P NK YKILT PL Y K+N
Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 70.5 bits (165), Expect = 3e-11
Identities = 43/107 (40%), Positives = 52/107 (48%)
Frame = +3
Query: 3 DQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXX 182
DQ+YN +VTAH N LVPL+LGAPD+AFPR+NN+ F
Sbjct: 35 DQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFGFFPLHWH 94
Query: 183 XXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 323
+ G + PL G SVDLAIF LHLAG+SS
Sbjct: 95 YYSFFTV--KGGLARDELSTPLYLVTISAGPSVDLAIFPLHLAGVSS 139
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 65.3 bits (152), Expect = 1e-09
Identities = 48/189 (25%), Positives = 76/189 (40%), Gaps = 13/189 (6%)
Frame = +3
Query: 90 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSN--IA 263
N LVPL +GA D+AFPR+N + + G T+Y PL++ I
Sbjct: 89 NYLVPLQIGADDLAFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTMYAPLNTPAYIP 148
Query: 264 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 443
G + +L + + +P+F ++ +T +
Sbjct: 149 GEGLGATSVVLALIMFTAAVTLGSVNFLTTMYRMRAEGLRMRDIPIFSLSINLTVWMMLF 208
Query: 444 XXXXXAGAITILLTDRNLNTSFF-----------DPAGGGDPILYQHLF*FFGHPEVYIL 590
A+ IL +D L T++F D G +L+ HLF FFGHPEVYI+
Sbjct: 209 AFAALLAALMILASDHILGTTYFQYSIDGTTMATDADNPGASLLWAHLFWFFGHPEVYIV 268
Query: 591 ILPGFGIIS 617
P G+++
Sbjct: 269 FFPALGVMA 277
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 64.9 bits (151), Expect = 2e-09
Identities = 36/85 (42%), Positives = 43/85 (50%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
Q+YN I+TAHA N LVP+++GAPD+AFPR+NNI F
Sbjct: 52 QLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLIL 111
Query: 186 XXXXXIVENGAGTG*TVYPPLSSNI 260
VE GAGTG TV LS I
Sbjct: 112 LLASAFVEQGAGTGWTVKCKLSQII 136
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 59.3 bits (137), Expect = 8e-08
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +3
Query: 201 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 323
+VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52
>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
subunit I - Tetragona dorsalis ziegleri
Length = 111
Score = 58.4 bits (135), Expect = 1e-07
Identities = 31/70 (44%), Positives = 40/70 (57%)
Frame = +3
Query: 387 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 566
DQ+ LF ++ IT AG IT+LL+DRN N FF GG PIL+Q++ F
Sbjct: 12 DQINLFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFFILIGGEYPILHQYMLWLF 71
Query: 567 GHPEVYILIL 596
GH +V LIL
Sbjct: 72 GHTDVLFLIL 81
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 57.2 bits (132), Expect = 3e-07
Identities = 28/77 (36%), Positives = 39/77 (50%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
Q+YN ++TAHA N VP+++G+PD+AFPR+NNI F
Sbjct: 56 QLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGSPDMAFPRLNNISFWLLPPSLLL 115
Query: 186 XXXXXIVENGAGTG*TV 236
+VE G G+G TV
Sbjct: 116 LLSSALVEVGCGSGWTV 132
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 55.6 bits (128), Expect = 9e-07
Identities = 32/85 (37%), Positives = 41/85 (48%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
Q +N ++TAHA N L+PL+LGA D+AF R+NNI F
Sbjct: 58 QAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLIL 117
Query: 186 XXXXXIVENGAGTG*TVYPPLSSNI 260
+VE GAGTG TV SS +
Sbjct: 118 ILTSALVEAGAGTGWTVKKICSSKM 142
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 51.6 bits (118), Expect = 2e-05
Identities = 27/77 (35%), Positives = 38/77 (49%)
Frame = +3
Query: 6 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 185
Q++N +V HA N L+PL++GA D++F R+NNI F
Sbjct: 53 QLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGASDMSFARLNNISFWLLPPALVC 112
Query: 186 XXXXXIVENGAGTG*TV 236
+VE+GAGTG TV
Sbjct: 113 LVTSTLVESGAGTGWTV 129
>UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441;
Bilateria|Rep: Cytochrome c oxidase subunit 1 - Pantodon
buchholtzi (Butterflyfish)
Length = 184
Score = 50.4 bits (115), Expect = 3e-05
Identities = 20/23 (86%), Positives = 23/23 (100%)
Frame = +3
Query: 561 FFGHPEVYILILPGFGIISHIIS 629
FFGHPEVYILILPGFG+ISHI++
Sbjct: 2 FFGHPEVYILILPGFGMISHIVA 24
>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
- Celatoblatta vulgaris
Length = 134
Score = 48.0 bits (109), Expect = 2e-04
Identities = 25/51 (49%), Positives = 29/51 (56%)
Frame = +2
Query: 407 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFIL 559
M C +YS +TC WSYYN IN SKLKYI+F F+ST IL
Sbjct: 84 MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYILFWPSSSWGSYFMSTPIL 134
>UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome
oxidase; n=1; Acidithiobacillus ferrooxidans|Rep:
Sub-unit I of an aa3-type cytochrome oxidase -
Thiobacillus ferrooxidans (Acidithiobacillus
ferrooxidans)
Length = 627
Score = 46.4 bits (105), Expect = 6e-04
Identities = 41/177 (23%), Positives = 65/177 (36%)
Frame = +3
Query: 96 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 275
L+PL+LG ++ FP++ + + G TG YPPL+ N G
Sbjct: 180 LIPLMLGTRNVVFPKLLGLSWWLLPPATFAVFMSPTT-GGFQTGWWGYPPLAQN---SGS 235
Query: 276 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 455
+ + ++S S ++P+FV + A
Sbjct: 236 GIVWYVLGAATILVASLLGAINIAGTMVYMRAKGMSLGRVPIFVWGLFAAATTLVVESPA 295
Query: 456 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 626
+ L+D + F+ G P+ Y F F HPEVY+ ILP F I I+
Sbjct: 296 TYTGALMDLSDMIAGSHFYT-GPTGHPLAYLDQFWFLFHPEVYVFILPAFAIWLEIL 351
>UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6;
Digenea|Rep: Cytochrome c oxidase subunit I -
Echinostoma hortense
Length = 154
Score = 45.6 bits (103), Expect = 0.001
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = +3
Query: 561 FFGHPEVYILILPGFGIISHI 623
FFGHPEVY+LILP FGI+SHI
Sbjct: 1 FFGHPEVYVLILPVFGIVSHI 21
>UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1;
Harmonia axyridis|Rep: Cytochrome c oxidase subunit 2 -
Harmonia axyridis (Multicolored Asian lady beetle)
Length = 193
Score = 44.8 bits (101), Expect = 0.002
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = +2
Query: 548 TFILIFWTS*SLYFNFTRIWYNFSYYF 628
+ ++IFW+S SLYFN IWYNF YY+
Sbjct: 2 SLVMIFWSSSSLYFNSPSIWYNFPYYY 28
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 44.0 bits (99), Expect = 0.003
Identities = 34/123 (27%), Positives = 41/123 (33%)
Frame = +2
Query: 134 PTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YRT*RKIRRSCYFFTTFSX 313
P NK +KIL TPL Y N C K C + +NSLP Y T R +F T
Sbjct: 79 PPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYLTLGPFRSYNHFCPTSCS 138
Query: 314 XXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXXXXXTTCFSWSYYNIINRSK 493
CM +YS + S+YNI K
Sbjct: 139 SVFNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTSFSPSIGSSHYNITYWPK 198
Query: 494 LKY 502
KY
Sbjct: 199 PKY 201
>UniRef50_Q6TP93 Cluster: Cytochrome c oxidase subunit I; n=2;
Bruchidius|Rep: Cytochrome c oxidase subunit I -
Bruchidius aff. varius GLK-2003
Length = 339
Score = 38.7 bits (86), Expect = 0.11
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = +3
Query: 576 EVYILILPGFGIISHIIS 629
EVYILILPGFG+ISHIIS
Sbjct: 155 EVYILILPGFGMISHIIS 172
>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
subunit I - Eutetramorium sp. BLF m1
Length = 201
Score = 37.1 bits (82), Expect = 0.35
Identities = 27/78 (34%), Positives = 35/78 (44%)
Frame = +3
Query: 270 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 449
G L IFSL + S + D++ L ++ ITA
Sbjct: 124 GSXXXLXIFSLXIXXXSXIFSAXNFISXIINMRHTMLTMDKISLLSWSILITAVLLLLSL 183
Query: 450 XXXAGAITILLTDRNLNT 503
AGAIT+LLTDRN+NT
Sbjct: 184 PVLAGAITMLLTDRNMNT 201
>UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4;
Chloroflexaceae|Rep: Cytochrome c oxidase, subunit I -
Roseiflexus sp. RS-1
Length = 561
Score = 33.9 bits (74), Expect = 3.2
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 525 GGDPILYQHLF*FFGHPEVYILILPGF 605
G DP+L + LF F GHP VY +LP +
Sbjct: 224 GTDPVLARTLFWFTGHPIVYFWLLPAY 250
>UniRef50_O67937 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 592
Score = 33.5 bits (73), Expect = 4.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 531 DPILYQHLF*FFGHPEVYILILPGF 605
+P+L + LF FFGHP VY +LP +
Sbjct: 209 NPLLARTLFWFFGHPVVYFWLLPAY 233
>UniRef50_Q9B9T9 Cluster: Cytochrome oxidase subunit 1; n=7;
Locustacarus buchneri|Rep: Cytochrome oxidase subunit 1
- Locustacarus buchneri
Length = 185
Score = 33.1 bits (72), Expect = 5.7
Identities = 23/62 (37%), Positives = 30/62 (48%)
Frame = +2
Query: 419 DYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFT 598
+Y+ TT S S +N N SKL++I+ S PN I ILI T L+ N T
Sbjct: 94 NYNNTTDYFTTSSSRSNHNTTNSSKLQHILLRSFGGSGPNPIPASILILRTPSGLHSNST 153
Query: 599 RI 604
I
Sbjct: 154 SI 155
>UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium falciparum (isolate 3D7)
Length = 1420
Score = 32.7 bits (71), Expect = 7.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 490 RSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFN 368
+++NN +I S NNN N++ T TN + +N+I +N
Sbjct: 1038 KTINNNIINDTSQSSYNNNMNSIQNTNRTNSSSSNNNISYN 1078
>UniRef50_Q5ABE2 Cluster: Putative uncharacterized protein CLN3;
n=1; Candida albicans|Rep: Putative uncharacterized
protein CLN3 - Candida albicans (Yeast)
Length = 785
Score = 32.7 bits (71), Expect = 7.5
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -2
Query: 544 YKIGSPPPAGSKNDVFKFRSVNN---IVIAPAKTGSDNNNKNAVIPTAH 407
Y++ +PP + +KN K S NN IA T ++NNN N+ +P H
Sbjct: 572 YQMVTPPNSANKNSN-KSNSANNNNTTTIATTTTTTNNNNNNSQLPAPH 619
>UniRef50_Q8ID15 Cluster: Putative uncharacterized protein
MAL13P1.352; n=2; Plasmodium|Rep: Putative
uncharacterized protein MAL13P1.352 - Plasmodium
falciparum (isolate 3D7)
Length = 1106
Score = 32.3 bits (70), Expect = 9.9
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 167 TPLPYIINFKKNCRKWCRN 223
T L Y + KK+CRKWCRN
Sbjct: 697 TKLMYCVIKKKHCRKWCRN 715
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 467,197,241
Number of Sequences: 1657284
Number of extensions: 8404170
Number of successful extensions: 19522
Number of sequences better than 10.0: 110
Number of HSP's better than 10.0 without gapping: 17883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19257
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46466611856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -