Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5b24
         (639 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    26   0.30 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    26   0.30 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    26   0.30 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    26   0.30 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    26   0.30 
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    26   0.30 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    26   0.30 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           25   0.40 
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      23   2.8  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   5.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   6.6  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   8.7  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +2

Query: 395 QVAPHLPRLRSAGRGDGHPLPRTLHHRRQAEPQ---ADHHQRP 514
           QVAP  P+   A    GH L  T+    Q +PQ   + H Q P
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQRLASTHLQSP 89


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +2

Query: 395 QVAPHLPRLRSAGRGDGHPLPRTLHHRRQAEPQ---ADHHQRP 514
           QVAP  P+   A    GH L  T+    Q +PQ   + H Q P
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQRLASTHLQSP 89


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +2

Query: 395 QVAPHLPRLRSAGRGDGHPLPRTLHHRRQAEPQ---ADHHQRP 514
           QVAP  P+   A    GH L  T+    Q +PQ   + H Q P
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQRLASTHLQSP 89


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +2

Query: 395 QVAPHLPRLRSAGRGDGHPLPRTLHHRRQAEPQ---ADHHQRP 514
           QVAP  P+   A    GH L  T+    Q +PQ   + H Q P
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQRLASTHLQSP 89


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +2

Query: 395 QVAPHLPRLRSAGRGDGHPLPRTLHHRRQAEPQ---ADHHQRP 514
           QVAP  P+   A    GH L  T+    Q +PQ   + H Q P
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQRLASTHLQSP 89


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +2

Query: 395 QVAPHLPRLRSAGRGDGHPLPRTLHHRRQAEPQ---ADHHQRP 514
           QVAP  P+   A    GH L  T+    Q +PQ   + H Q P
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQRLASTHLQSP 89


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +2

Query: 395 QVAPHLPRLRSAGRGDGHPLPRTLHHRRQAEPQ---ADHHQRP 514
           QVAP  P+   A    GH L  T+    Q +PQ   + H Q P
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQRLASTHLQSP 89


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 395 QVAPHLPRLRSAGRGDGHPLPRTLHHRRQAEPQ 493
           QVAP  P+   A    GH L  T+    Q +PQ
Sbjct: 47  QVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQ 79


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = -1

Query: 450 GC-PSPRPALRSRGRCGATCRLSEGCSW 370
           GC P P P+    GRC +  ++S    W
Sbjct: 54  GCVPKPIPSFACIGRCASYIQVSGSKIW 81


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +3

Query: 27  SHSPVLSVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGEFKDIS 164
           S  P LS     S   +FN +P    + A    +   +N ++ D+S
Sbjct: 458 SQVPALSTPNLLSLSLAFNSLPTVALEVAGNISSLRYLNLDYNDLS 503


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 598 PTGGPAPRPSSP 633
           PT G  P PSSP
Sbjct: 55  PTPGDVPTPSSP 66


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 432 DEETGIPFRGLFIIDDKQN 488
           D ++ +PF GLFI +   N
Sbjct: 15  DSDSKLPFSGLFIENQAGN 33


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,927
Number of Sequences: 336
Number of extensions: 2423
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)