Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5b24
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 269 2e-73
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 30 0.25
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 29 0.57
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 28 0.99
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 28 1.3
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 28 1.3
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 3.0
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe... 26 5.3
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 7.0
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 25 7.0
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 9.2
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 269 bits (660), Expect = 2e-73
Identities = 122/180 (67%), Positives = 149/180 (82%)
Frame = +3
Query: 87 MPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKAD 266
M LQ+ KPAP FK TAVVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A
Sbjct: 1 MSLQIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAAS 60
Query: 267 EFRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETG 446
+F + +V+ STDS ++HLA+INTPRK+GGLG +NIPL++D SH++SRDYGVL E+ G
Sbjct: 61 KFAERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAG 120
Query: 447 IPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTI 626
+ FRGLF+ID K LRQITINDLPVGRSV+E LRL+ AFQF ++HGEVCPANW G+ TI
Sbjct: 121 VAFRGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWHKGSDTI 180
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 30.3 bits (65), Expect = 0.25
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -2
Query: 557 LHQPQGLLHRPPHGQVVDGDL-PEVLLVVDDEESSEGDARLLVQ 429
L Q Q L + ++ D DL PEV ++ +EES G++R L++
Sbjct: 115 LQQQQLLAEKDEENEIADNDLEPEVYDILYEEESKLGESRDLIR 158
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 29.1 bits (62), Expect = 0.57
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +3
Query: 12 FISKASHSPVLSVFVYYSK---VFSFNKMPLQMT--KPAPQFKATAVVNGEFKDISLSDY 176
FI+ S + + SVFV +F+ + L P P F+ + +G+F S +
Sbjct: 234 FIASYSLAEITSVFVLADGTACIFTLSSSTLLKLHQSPEPHFELISKYSGDFPWKSCTIL 293
Query: 177 KGKYVVLFFYPLDFTFVCPTE 239
K K V L YP TF TE
Sbjct: 294 KSKPVSLCVYPEKITFNWLTE 314
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 28.3 bits (60), Expect = 0.99
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 619 LAPGLQLAGHTSPCLSVNWN 560
L P +L HT PC SV WN
Sbjct: 174 LKPKYRLTKHTQPCTSVCWN 193
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.3
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
Frame = +3
Query: 15 ISKASHSPVLSVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGE--------FKDISLS 170
+S S S F+Y SF++ T +P+ TA+ FK +
Sbjct: 26 LSPIGDSKNTSSFIYLGNPISFHEYNYDETMVSPENVKTAIAGSAKDHETCRGFKKTGTT 85
Query: 171 DYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRK 278
YK F + D+T PT + S+ DEF K
Sbjct: 86 SYKD-----FVFSRDYTNWTPTFWVLLSQLIDEFLK 116
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 483 QNLRQITINDLPVGRSVEET--LRLVQAFQFTDKHGEV 590
+NL++I + LPVG +++ LR V T K+G++
Sbjct: 92 KNLKKINLRQLPVGTELQKIGWLREVNTIILTSKNGDI 129
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = -3
Query: 298 PSTSQPILRNSSAFSENAMISVGHTNVKSKG*KNSTTYFPL*SDREMSLNSPLTTAVALN 119
P TS +L +S+ + + +++ T + S N T P+ S ++ ++P+T++ ALN
Sbjct: 1247 PITSSSVLNSSTPITSSTVVN-SSTPITSSTALN--TSIPITSSSVLNSSTPITSSTALN 1303
>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 195
Score = 25.8 bits (54), Expect = 5.3
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Frame = +3
Query: 90 PLQMTKPAPQ--FKATAVVNGEFKDISLSDYKG-----------KYVVLFFYPLDFTFVC 230
P+ + KPA +T V DI+L D G K +V+F YP T C
Sbjct: 30 PVMLKKPAKDESVDSTIQVGDVIPDITLPDEDGTSIRLRDITANKGLVIFAYPKASTPGC 89
Query: 231 PTEIIAFSEKADEFRKIGCEVLGASTDS 314
+ F + + + EVLG S D+
Sbjct: 90 TKQGCGFRDNYPKIQASDYEVLGLSFDT 117
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +3
Query: 3 TVIFISKASHSPVLSVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVN 143
T +F KA + S +FSFN TKP+P +T N
Sbjct: 447 TPVFSFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFN 493
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 25.4 bits (53), Expect = 7.0
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +2
Query: 350 QAGRTRSHEHPSDKRQVAPHLPRLRSAGRGDGHPLPRTLHHRRQAEPQADHHQRP 514
+A R+ H H + + H R S G H +LH QA+P A ++P
Sbjct: 448 KAVRSARHRHYASLDEQGLHSLRNLSKTSGMNHSADFSLHEFGQADPFAYEIEKP 502
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 357 GGLGPMNIPLISDKS 401
GGL PM+IP IS +S
Sbjct: 673 GGLAPMSIPAISKRS 687
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,156,973
Number of Sequences: 5004
Number of extensions: 41404
Number of successful extensions: 135
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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