Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5b22
         (563 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P34834 Cluster: ATP synthase a chain; n=182; Protostomi...    50   5e-05
UniRef50_P00850 Cluster: ATP synthase a chain; n=75; Panarthropo...    48   2e-04
UniRef50_Q9ME79 Cluster: ATP synthase protein 8; n=16; Ditrysia|...    46   8e-04
UniRef50_Q53E88 Cluster: ATP synthase A chain; n=12; Arthropoda|...    41   0.017

>UniRef50_P34834 Cluster: ATP synthase a chain; n=182;
           Protostomia|Rep: ATP synthase a chain - Anopheles
           gambiae (African malaria mosquito)
          Length = 226

 Score = 49.6 bits (113), Expect = 5e-05
 Identities = 32/106 (30%), Positives = 41/106 (38%)
 Frame = +1

Query: 229 TILGLLFXPYRF*XIPNRXFIXGKXXSXXXHKEFXTXLXNXYXKGXXXXXXXXXXXXXXX 408
           T LGL   P  +  +PNR  +         HKEF T L      G               
Sbjct: 25  TFLGLFLIPVSYWLMPNRFQVIWNNILLTLHKEFKTLLGPSGHNGSTLMFISLFSLIMFN 84

Query: 409 XXLGLFPYIFTRTRXLTXXXXXXXXXXXXFIXYG*IXKYKSHIYSY 546
             LGLFPYIFT T  LT            F+ YG I  +  H++++
Sbjct: 85  NFLGLFPYIFTSTSHLTLTLALAFPLWLSFMLYGWI-NHTQHMFAH 129


>UniRef50_P00850 Cluster: ATP synthase a chain; n=75;
           Panarthropoda|Rep: ATP synthase a chain - Drosophila
           melanogaster (Fruit fly)
          Length = 224

 Score = 47.6 bits (108), Expect = 2e-04
 Identities = 32/106 (30%), Positives = 42/106 (39%)
 Frame = +1

Query: 229 TILGLLFXPYRF*XIPNRXFIXGKXXSXXXHKEFXTXLXNXYXKGXXXXXXXXXXXXXXX 408
           T LGLL  P  +  +P+R  I         HKEF T L      G               
Sbjct: 24  TFLGLLMIPSIYWLMPSRYNIMWNSILLTLHKEFKTLLGPSGHNGSTFIFISLFSLILFN 83

Query: 409 XXLGLFPYIFTRTRXLTXXXXXXXXXXXXFIXYG*IXKYKSHIYSY 546
             +GLFPYIFT T  LT            F+ YG I  +  H++++
Sbjct: 84  NFMGLFPYIFTSTSHLTLTLSLALPLWLCFMLYGWI-NHTQHMFAH 128


>UniRef50_Q9ME79 Cluster: ATP synthase protein 8; n=16;
           Ditrysia|Rep: ATP synthase protein 8 - Bombyx mori (Silk
           moth)
          Length = 53

 Score = 45.6 bits (103), Expect = 8e-04
 Identities = 20/37 (54%), Positives = 25/37 (67%)
 Frame = +1

Query: 4   PXIIPIN*IXFLXFFXCXX*ILNIVXYFXYEXKIHLM 114
           P ++PIN I FL FF C   I NI+ YF YE K+HL+
Sbjct: 2   PQMMPINWIFFLFFFICIFLIFNIMNYFIYEKKMHLI 38


>UniRef50_Q53E88 Cluster: ATP synthase A chain; n=12;
           Arthropoda|Rep: ATP synthase A chain - Eriocheir
           sinensis (Chinese mitten crab)
          Length = 224

 Score = 41.1 bits (92), Expect = 0.017
 Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
 Frame = +1

Query: 229 TILGLLFXPYRF*XIPNR-XFIXGKXXSXXXHKEFXTXLXNXYXKGXXXXXXXXXXXXXX 405
           TILGL+F PY +   P+R   + GK  S   HKEF   L   +  G              
Sbjct: 25  TILGLMFLPYMYWASPSRWSLLWGKIIS-TLHKEFKALLQPSH-NGASMVFIALFSLIVF 82

Query: 406 XXXLGLFPYIFTRTRXLTXXXXXXXXXXXXFIXYG*IXKYKSHIYSY 546
              LGL PY+FT +  +              + +G I K+  H++++
Sbjct: 83  NNFLGLLPYVFTSSSHMVMTLSLSLPLWITLMTFGWI-KHTKHMFAH 128


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,328,979
Number of Sequences: 1657284
Number of extensions: 1863515
Number of successful extensions: 1430
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37904934977
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)