Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5b20
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   3.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   3.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.4  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.7  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   7.7  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 212 YN*YFPKHPMTF*MRSFFGEGVAPFSFLCCCNSILY 105
           +N Y P+  MT     +F  G+   S+L C    +Y
Sbjct: 190 WNRYVPEGNMTACGTDYFNRGLLSASYLVCYGIWVY 225


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = +1

Query: 442 LGTLFGSVFFGMASDRFGRKNPLLV---AVVIQVTMGITAAYVPDYWSFTFVRFLVG--M 606
           +G +   + FG+ + +FG +  L+V    ++ ++ M +    +  Y  F  +  + G  M
Sbjct: 241 MGMIVFCITFGLVAGQFGAQGKLIVDFFMILNEIIMKLVGIIIMWYSPFGIMCLIAGKIM 300

Query: 607 SVGGTMVTS 633
           S+     T+
Sbjct: 301 SINNLTATA 309


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 212 YN*YFPKHPMTF*MRSFFGEGVAPFSFLCCCNSILY 105
           +N Y P+  MT     +F  G+   S+L C    +Y
Sbjct: 66  WNRYVPEGNMTACGTDYFNRGLLSASYLVCYGIWVY 101


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 151 AWPHFRSCVAAIPFFII 101
           AW HF + +  + FFI+
Sbjct: 400 AWRHFAAIIEWLSFFIV 416


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 13/57 (22%), Positives = 24/57 (42%)
 Frame = +1

Query: 415 TSFTQTLFQLGTLFGSVFFGMASDRFGRKNPLLVAVVIQVTMGITAAYVPDYWSFTF 585
           T +T  +  L   F  ++FG  +    +   L VA+ +  T+ +   Y P  +   F
Sbjct: 711 TMYTTCIIWLA--FVPIYFGTGNAHETQITTLCVAISLSATVTLVCLYSPKIYIILF 765


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 326 VLVRILYTTHQSSNG 370
           V+ RILY T  SSNG
Sbjct: 804 VIPRILYLTWYSSNG 818


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 13/57 (22%), Positives = 24/57 (42%)
 Frame = +1

Query: 415 TSFTQTLFQLGTLFGSVFFGMASDRFGRKNPLLVAVVIQVTMGITAAYVPDYWSFTF 585
           T +T  +  L   F  ++FG  +    +   L VA+ +  T+ +   Y P  +   F
Sbjct: 801 TMYTTCIIWLA--FVPIYFGTGNAHETQITTLCVAISLSATVTLVCLYSPKIYIILF 855


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 579 YIRKVPCGDVR 611
           YI   PCGD R
Sbjct: 366 YINTAPCGDAR 376


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 294 IYLCKYEQRNLSLFGSYIRHISLQTDYNNGM 386
           +Y+C++  R      S   H SLQ   ++GM
Sbjct: 35  LYVCEFCNRRYRTKNSLTTHKSLQHRGSSGM 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,471
Number of Sequences: 438
Number of extensions: 4740
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)