Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5b19
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771           29   3.1  
12_01_0373 + 2897874-2898911                                           29   3.1  
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    28   4.1  
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851...    28   5.5  
10_01_0160 - 1812213-1813790                                           27   7.2  
10_01_0154 - 1764554-1764727,1764829-1764927,1765710-1766172,176...    27   7.2  
02_02_0366 + 9494205-9494810                                           27   9.6  
01_06_1315 + 36226262-36226533,36227946-36228060,36228710-362287...    27   9.6  

>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
          Length = 372

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +2

Query: 41  IVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVI 220
           + A  A +  DV+   +G     V+ND+   G   ++    VVV +      G  A E+ 
Sbjct: 273 LTARTAGIDEDVVLLDSGDGKVAVVNDDDDSGPLVVLQRRVVVVEEKGSLILGVEAAEIG 332

Query: 221 NDE 229
           ++E
Sbjct: 333 SEE 335


>12_01_0373 + 2897874-2898911
          Length = 345

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = -3

Query: 222 LITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSSLITSVALAPVEDSITSFTTTAGAA 46
           L+ ++A  P   S  + TTT  AAT     T  S+  TS       +  TS T  A AA
Sbjct: 254 LLLALAAVPSSSSSDTTTTTTAAATTTTSDTSCSTASTST----TSNGATSVTAAATAA 308


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 332 YSNLVALRYLKLLVQPQPRLL*WFLL 255
           Y+N  AL+YL      +PRLL W LL
Sbjct: 547 YTNHAALKYLLTKKDAKPRLLRWILL 572


>09_02_0393 +
           8510089-8510274,8510450-8510806,8510889-8511011,
           8511209-8511523,8511576-8511682,8512559-8512629,
           8512952-8513029,8513390-8513454,8514224-8514274,
           8514373-8514414,8514785-8515105,8515154-8517880
          Length = 1480

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +2

Query: 29  GSKTIVAAPAVVVNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVN 175
           G K+ + +PA+     + S+   S T+ +N+EV+   +T+    AV+V+
Sbjct: 478 GMKSRILSPALPQQSYLSSAELPSLTDHVNEEVAKLDRTVRRITAVLVD 526


>10_01_0160 - 1812213-1813790
          Length = 525

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 399 IAVSASGAVTITASGTASARIFVLKSCGASV 307
           I   ASGA    A+  AS  +FV+KS G +V
Sbjct: 19  IGHGASGATVSLAADDASGELFVVKSAGDAV 49


>10_01_0154 -
           1764554-1764727,1764829-1764927,1765710-1766172,
           1766255-1766541
          Length = 340

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +2

Query: 65  VNDVIESSTGASATEVINDEVSVGSKTIVAAPAVVVNDPIESSTGASATEVINDEALV 238
           V DV  SS       + N  VS G+KT ++ P+V     ++  +  + T V+ND  L+
Sbjct: 157 VEDVEISSQTLKVLTIKNTHVSYGNKTTISTPSVTY---LKLWSPLNGTYVLNDMPLL 211


>02_02_0366 + 9494205-9494810
          Length = 201

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 417 VGDPVVIAVSASGAVTITASGTASARIFVL 328
           +GDP  +   A+GAV +T + T   R+ VL
Sbjct: 136 LGDPGFLGDVAAGAVAVTTATTVRGRVAVL 165


>01_06_1315 +
           36226262-36226533,36227946-36228060,36228710-36228752,
           36229953-36230329,36230330-36230481,36230591-36230838,
           36230919-36231047,36231130-36231739,36231842-36232086,
           36232195-36232325
          Length = 773

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 234 NASSLITSVALAPVEDSIGSFTTTAGAATIVLEPTDTSS 118
           N  S + ++A+AP  ++ G+F  T   A +   PT  S+
Sbjct: 515 NPGSPVYAMAIAPYTNTQGTFDNTTAVAVLEYAPTRASA 553


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,824,512
Number of Sequences: 37544
Number of extensions: 195124
Number of successful extensions: 527
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)