Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5b17
         (204 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   1.3  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   1.7  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    19   6.9  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    18   9.2  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 34  YFCWSTFTESS 66
           Y CWS FT+ +
Sbjct: 231 YTCWSEFTQKT 241


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 20.6 bits (41), Expect = 1.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 31  KYFCWSTFTE 60
           +Y CW+TF E
Sbjct: 187 EYDCWATFQE 196


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 18.6 bits (36), Expect = 6.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 72  FH*GFSECA 46
           F  GFSECA
Sbjct: 110 FRAGFSECA 118


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 18.2 bits (35), Expect = 9.2
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -1

Query: 39  KIFNGKWLP 13
           K  NG+W+P
Sbjct: 89  KYVNGEWVP 97


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,152
Number of Sequences: 336
Number of extensions: 118
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 44
effective length of database: 107,801
effective search space used:  2479423
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)