Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5b17
         (204 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       23   4.2  
SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase comp...    23   7.3  
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    22   9.7  

>SPBC12C2.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 19 PLTIKYFCWSTF 54
          PLTI Y  WSTF
Sbjct: 27 PLTIVYTIWSTF 38


>SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase complex
           II subunit Rpb7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 172

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 2   MG*DGNHLPLNIFVGAHSLNP 64
           MG   N  PLN+FV +H + P
Sbjct: 98  MGFFANIGPLNVFVSSHLVPP 118


>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 63 GFSECAPTKIFNGKWLPS 10
          G SE APT+I + + LP+
Sbjct: 14 GHSEMAPTRITSSRALPA 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 338,378
Number of Sequences: 5004
Number of extensions: 2230
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 2,362,478
effective HSP length: 47
effective length of database: 2,127,290
effective search space used: 42545800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)