Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5b13
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239...    28   5.5  
09_06_0071 - 20675501-20675830,20676120-20676286,20676472-206766...    28   7.3  
04_04_0207 + 23602065-23604315,23604611-23605116                       28   7.3  
01_01_0975 - 7686297-7686458,7687117-7687245,7687754-7687831,768...    28   7.3  

>06_02_0298 +
           13921310-13921834,13921923-13922063,13923601-13923951,
           13924071-13924130,13924261-13924380,13924569-13924718
          Length = 448

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 39  YRTYRSHLIV*EAYEASWT 95
           YR++R H+I  EA  ASWT
Sbjct: 224 YRSHRKHMIAREAEAASWT 242


>09_06_0071 -
           20675501-20675830,20676120-20676286,20676472-20676619,
           20676768-20677205,20677667-20677741,20678000-20678283,
           20678940-20679159
          Length = 553

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 579 GGGDPANGSNSFVGFVFIHTGSVNPSLISGSL 484
           G   PA+      GF ++H+ S NP++  G+L
Sbjct: 474 GASIPADAKTGCKGFQYLHSTSPNPNVAMGAL 505


>04_04_0207 + 23602065-23604315,23604611-23605116
          Length = 918

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 522 TGSVNPSLISGSLEAIFI 469
           TG V PSL+SG+L A+F+
Sbjct: 482 TGRVPPSLVSGALPAVFL 499


>01_01_0975 -
           7686297-7686458,7687117-7687245,7687754-7687831,
           7688011-7688469,7690648-7690788,7691771-7692421
          Length = 539

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 39  YRTYRSHLIV*EAYEASWT 95
           YR++R HL+  EA  ASWT
Sbjct: 266 YRSHRKHLMAREAEAASWT 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,402,006
Number of Sequences: 37544
Number of extensions: 234400
Number of successful extensions: 793
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)