Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5b02
(491 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46381-4|CAA86519.2| 604|Caenorhabditis elegans Hypothetical pr... 54 6e-08
AL021497-2|CAA16400.1| 606|Caenorhabditis elegans Hypothetical ... 52 2e-07
AL021497-3|CAA16405.1| 613|Caenorhabditis elegans Hypothetical ... 43 1e-04
AF040646-6|AAK31540.1| 510|Caenorhabditis elegans Hypothetical ... 39 0.002
AF040646-5|AAK31539.1| 492|Caenorhabditis elegans Hypothetical ... 39 0.002
Z81099-3|CAB03186.3| 490|Caenorhabditis elegans Hypothetical pr... 36 0.016
AF039046-2|AAB94218.2| 516|Caenorhabditis elegans Hypothetical ... 35 0.037
AF016656-3|AAB66037.2| 515|Caenorhabditis elegans Hypothetical ... 34 0.049
Z83113-3|CAB05545.1| 479|Caenorhabditis elegans Hypothetical pr... 33 0.11
Z99270-1|CAB16470.4| 500|Caenorhabditis elegans Hypothetical pr... 32 0.20
Z70683-6|CAA94591.2| 512|Caenorhabditis elegans Hypothetical pr... 32 0.20
U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical pr... 28 3.2
Z77738-1|CAB01297.1| 89|Caenorhabditis elegans PP1-like Ser/Th... 27 5.6
U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna bindi... 27 7.4
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 27 7.4
AF036704-3|AAB88559.2| 503|Caenorhabditis elegans Hypothetical ... 27 7.4
AC024843-12|AAF60833.3| 986|Caenorhabditis elegans Hypothetical... 27 9.8
>Z46381-4|CAA86519.2| 604|Caenorhabditis elegans Hypothetical
protein M01F1.5 protein.
Length = 604
Score = 54.0 bits (124), Expect = 6e-08
Identities = 29/104 (27%), Positives = 47/104 (45%)
Frame = +3
Query: 60 MYAFSFFYNLGPATIPFVIAAEFFVPEVRGLCNCLINACTWLMNFVTLQLFSQLVDWVGL 239
M + ++ G A +P+V+ AEF+ R + AC W+ N + F L
Sbjct: 475 MVFYLLSFSAGYAPLPWVLNAEFYPLWARSTAVSVSTACNWIFNLIVSLTFLSLSQAATK 534
Query: 240 APXXXXXXXXXXXXAVFCQFYLPETKGMPIEAIPLLFIKKDKRR 371
VF F++PETKG I+ + +LF+ K++RR
Sbjct: 535 YGTFFIYCGCTMVALVFVFFFVPETKGYSIDEVEMLFMTKEERR 578
>AL021497-2|CAA16400.1| 606|Caenorhabditis elegans Hypothetical
protein Y51A2D.4 protein.
Length = 606
Score = 52.0 bits (119), Expect = 2e-07
Identities = 25/97 (25%), Positives = 44/97 (45%)
Frame = +3
Query: 81 YNLGPATIPFVIAAEFFVPEVRGLCNCLINACTWLMNFVTLQLFSQLVDWVGLAPXXXXX 260
++ G ++P+V+ +EF+ R C + W+ N + + L +G
Sbjct: 478 FSSGFTSLPWVLNSEFYPMWARSTCVAISTTSNWVFNLIIALTYLSLTQVIGKYGAFWLY 537
Query: 261 XXXXXXXAVFCQFYLPETKGMPIEAIPLLFIKKDKRR 371
+F F +PETKG IE + +LF+ K +RR
Sbjct: 538 AGLTVIAFIFILFLVPETKGYSIEEVEMLFMNKKQRR 574
>AL021497-3|CAA16405.1| 613|Caenorhabditis elegans Hypothetical
protein Y51A2D.5 protein.
Length = 613
Score = 42.7 bits (96), Expect = 1e-04
Identities = 22/103 (21%), Positives = 43/103 (41%)
Frame = +3
Query: 60 MYAFSFFYNLGPATIPFVIAAEFFVPEVRGLCNCLINACTWLMNFVTLQLFSQLVDWVGL 239
M + ++ G ++P+V+ +EF+ R C + W+ N + + L +
Sbjct: 479 MGVYLLTFSCGFTSLPWVLNSEFYPMWARSTCVSISTLSNWVFNLIIALTYLSLTHAITK 538
Query: 240 APXXXXXXXXXXXXAVFCQFYLPETKGMPIEAIPLLFIKKDKR 368
+F F +PET G I+ + +LF+ K +R
Sbjct: 539 YGAFWLYAIFTIIAFIFIYFLVPETTGYSIDEVEMLFMNKRQR 581
>AF040646-6|AAK31540.1| 510|Caenorhabditis elegans Hypothetical
protein H17B01.1b protein.
Length = 510
Score = 38.7 bits (86), Expect = 0.002
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
Frame = +3
Query: 30 WAPQWTTAGFMYAFSFFYNLGPATIPFVIAAEFFVPEVRGLCNCLINACTWLMNFVTLQL 209
WA ++ GF+ F + GP IP+ +E F RG N + W N +
Sbjct: 402 WA-SYSAIGFVLLFVISFATGPGAIPWFFVSEIFDSSARGNANSIAVMVNWAANLLVGLT 460
Query: 210 FSQLVDWVGLAPXXXXXXXXXXXXAVFCQF-YLPETKGMPIEAIPLLFIKK 359
F + + + +F + ++PETKG IE I F K+
Sbjct: 461 FLPINNL--MQQYSFFIFSGFLAFFIFYTWKFVPETKGKSIEQIQAEFEKR 509
>AF040646-5|AAK31539.1| 492|Caenorhabditis elegans Hypothetical
protein H17B01.1a protein.
Length = 492
Score = 38.7 bits (86), Expect = 0.002
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
Frame = +3
Query: 30 WAPQWTTAGFMYAFSFFYNLGPATIPFVIAAEFFVPEVRGLCNCLINACTWLMNFVTLQL 209
WA ++ GF+ F + GP IP+ +E F RG N + W N +
Sbjct: 384 WA-SYSAIGFVLLFVISFATGPGAIPWFFVSEIFDSSARGNANSIAVMVNWAANLLVGLT 442
Query: 210 FSQLVDWVGLAPXXXXXXXXXXXXAVFCQF-YLPETKGMPIEAIPLLFIKK 359
F + + + +F + ++PETKG IE I F K+
Sbjct: 443 FLPINNL--MQQYSFFIFSGFLAFFIFYTWKFVPETKGKSIEQIQAEFEKR 491
>Z81099-3|CAB03186.3| 490|Caenorhabditis elegans Hypothetical
protein K08F9.1 protein.
Length = 490
Score = 35.9 bits (79), Expect = 0.016
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Frame = +3
Query: 57 FMYAFSFFYNLGPATIPFVIAAEFFVPEVRGLCNCLINACTWLMNFVTLQLFSQLVDWVG 236
F+ F FF+ LGP + + I AE + R + + F + F + + +G
Sbjct: 372 FICIFQFFFALGPGPLSYFINAELVGQDARSAAQSWASVVQMISQFSIITAFLPMKNQLG 431
Query: 237 LA-PXXXXXXXXXXXXAVFCQFYLPETKG-MPIE 332
A VF F LPETK PIE
Sbjct: 432 EAWSYLILFVAPVAVSLVFLYFSLPETKNKSPIE 465
>AF039046-2|AAB94218.2| 516|Caenorhabditis elegans Hypothetical
protein R09B5.11 protein.
Length = 516
Score = 34.7 bits (76), Expect = 0.037
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 2/114 (1%)
Frame = +3
Query: 24 FSWAPQWTTAGFMYAFSFFYNLGPATIPFVIAAEFFVPEVRGLCNCLINACTWLMNFVTL 203
+ WA + F+ +F + GP IP+ +E F RG + W+ N++
Sbjct: 401 YHWA-SYMNVLFILSFVVTFAFGPGPIPWFFTSELFDSATRGRAAAVSATSNWVANWMVG 459
Query: 204 QLFSQLVDWVGLAPXXXXXXXXXXXXAVFCQFYLPETKGMPIEAI--PLLFIKK 359
F + + + A+F ++PETKG AI L F++K
Sbjct: 460 LTFLPINNIIH-QYAFLMFTFFTFTFAIFTWKFVPETKGKSPSAIRKELAFMRK 512
>AF016656-3|AAB66037.2| 515|Caenorhabditis elegans Hypothetical
protein C35A11.4 protein.
Length = 515
Score = 34.3 bits (75), Expect = 0.049
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Frame = +3
Query: 57 FMYAFSFFYNLGPATIPFVIAAEFFVPEVRGLCNCLINACTWLMNFVTLQLFSQLVDWVG 236
F+ F+FF+ LGP + + I AE R + L FV + F + + +G
Sbjct: 372 FICIFTFFFALGPGPLCYFINAELVGQAARSAAQSWASVIQMLSRFVIVTAFLPMKNQLG 431
Query: 237 LA-PXXXXXXXXXXXXAVFCQFYLPETK 317
A V+ F LPETK
Sbjct: 432 EAWSYLILFVAPVAASLVYLYFSLPETK 459
>Z83113-3|CAB05545.1| 479|Caenorhabditis elegans Hypothetical
protein K08H10.6 protein.
Length = 479
Score = 33.1 bits (72), Expect = 0.11
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
Frame = +3
Query: 42 WTTAGFMYAFSFFYNLGPATIPFVIAAEFFVPEVRGLCNCLINACTWLMNFVTLQLFSQL 221
W F+F +++G I AE P + + +F+ ++ QL
Sbjct: 377 WPFLALFVLFTFVFSIGIGPAAVFIGAELAPPGTISKMQSYSTSVQFAGSFICPIIYLQL 436
Query: 222 VDWVGLAPXXXXXXXXXXXXAVFCQFYLPETKG-MPIEAIPLL 347
V+ +G A F YLPETKG P+E LL
Sbjct: 437 VESIGGFAFMLFIVPLTITAAYF-YMYLPETKGKSPVEIYGLL 478
>Z99270-1|CAB16470.4| 500|Caenorhabditis elegans Hypothetical
protein Y37A1A.3 protein.
Length = 500
Score = 32.3 bits (70), Expect = 0.20
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Frame = +3
Query: 69 FSFFYNLGPATIPFVIAAEFFVPEVRGLCNCLINACTWLMNFVTLQLFSQLVDWVGLAPX 248
F+F + +GP + I E R + NA ++ F+ L + + +
Sbjct: 400 FNFLFAMGPGPLSMFITGELVPQNCRSASSVWTNAVMAVVRFLILTFYLPVKNMTSEFMA 459
Query: 249 XXXXXXXXXXXAVFCQFY-LPETKGMPIEAI 338
AV F+ LPETKG +E I
Sbjct: 460 YAIFFVVPMIVAVLVIFFLLPETKGRNVEEI 490
>Z70683-6|CAA94591.2| 512|Caenorhabditis elegans Hypothetical
protein F13B12.2 protein.
Length = 512
Score = 32.3 bits (70), Expect = 0.20
Identities = 18/69 (26%), Positives = 25/69 (36%)
Frame = +3
Query: 30 WAPQWTTAGFMYAFSFFYNLGPATIPFVIAAEFFVPEVRGLCNCLINACTWLMNFVTLQL 209
WA W A + + YNLG + + + AE PE A W+ T
Sbjct: 384 WA-SWGFAAAFFMYGIGYNLGVGPVAYFLPAELVPPEAASASLGAAVAVNWICTITTTLF 442
Query: 210 FSQLVDWVG 236
+ L VG
Sbjct: 443 YYPLSKTVG 451
>U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical
protein C06E7.4 protein.
Length = 500
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 128 ELGSDHERNRRRSQVVEEGEGVH-EARCRPLWSPAELQLSRHQ 3
E +D +RNRR+S V+E+ EAR P+ L S HQ
Sbjct: 405 EKENDEKRNRRKSSVLEKTAAFEIEARRNDRKEPSFLSRSSHQ 447
>Z77738-1|CAB01297.1| 89|Caenorhabditis elegans PP1-like Ser/Thr
protein phosphataseprotein.
Length = 89
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 142 TSGTKNSAAITNGIVAGP 89
T TKN+ A+TN +V+GP
Sbjct: 55 TDSTKNATAVTNPLVSGP 72
>U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform a protein.
Length = 868
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -1
Query: 173 GVDQTIAQTSDFWHKELGSDHERNRRRSQVVEEGEGVHEARCRP 42
G + + A+T D+WHK G + + ++ + + + +AR P
Sbjct: 149 GNNTSTAKTGDYWHKN-GGERKEDKSQPKAYYQRNDRFQARANP 191
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -1
Query: 173 GVDQTIAQTSDFWHKELGSDHERNRRRSQVVEEGEGVHEARCRP 42
G + + A+T D+WHK G + + ++ + + + +AR P
Sbjct: 346 GNNTSTAKTGDYWHKN-GGERKEDKSQPKAYYQRNDRFQARANP 388
>AF036704-3|AAB88559.2| 503|Caenorhabditis elegans Hypothetical
protein ZK185.2 protein.
Length = 503
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 78 FYNLGPATIPFVIAAEFFVPEVRGLCNCLINACTWLM 188
F+N P TI FV+ V + +C L+ A W+M
Sbjct: 417 FHNTTPFTISFVLVCAIQVTTLLYICQILVRA-MWIM 452
>AC024843-12|AAF60833.3| 986|Caenorhabditis elegans Hypothetical
protein Y61A9LA.10 protein.
Length = 986
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 203 KRHKIHEPSTGVDQTIAQTSDFWHKELGSDHERNRRRSQVVEEGEGV 63
K K++ P +G+ I D + E + H NR+R +VE EGV
Sbjct: 259 KERKVYAPFSGLGGVIYD-KDAIYIESKNAHNFNRKRDGLVEALEGV 304
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,510,848
Number of Sequences: 27780
Number of extensions: 165957
Number of successful extensions: 446
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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