Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5a22
         (636 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    27   3.0  
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    26   4.0  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   6.9  
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    25   9.1  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   9.1  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   9.1  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   9.1  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.1  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   9.1  

>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 531 HIY-SYNSXRNTLYFNTIYSNYWKPSEILFDLEL 629
           H+Y +YN  +    F+ + S+Y +P + LFD EL
Sbjct: 262 HMYFNYNYGQFFTLFDRLCSSYRQPDQELFDAEL 295


>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 520 NTNHIFIHIIPQGTPYILIPFIVIIGNH 603
           N+ H F  +I QGT  I   F++ I +H
Sbjct: 391 NSQHSFFQLIHQGTKLIPADFLIPIESH 418


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 194 C*WIKNRK*VCY-HFQLKVNFFFWLNLLIRCIFFS 93
           C + KN+  +C  +FQ  +  F W++++ R + FS
Sbjct: 370 CPYGKNKTLICLLNFQSSLLSFEWISIISRALLFS 404


>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 531 HIY-SYNSXRNTLYFNTIYSNYWKPSEILFDLEL*Q 635
           HIY +YN  + T  F+ + +++  P E  FD +L Q
Sbjct: 229 HIYFNYNYGQFTTLFDRLGNSFRAPDEAWFDKDLRQ 264


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +1

Query: 517 KNTNHIFIHIIPQ--GTPYILIPFIVIIGN 600
           K TN IF  +I    GT  ILI  + I+GN
Sbjct: 329 KVTNIIFFRVIGAIYGTALILITIVCIVGN 358


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +1

Query: 517 KNTNHIFIHIIPQ--GTPYILIPFIVIIGN 600
           K TN IF  +I    GT  ILI  + I+GN
Sbjct: 329 KVTNIIFFRVIGAIYGTALILITIVCIVGN 358


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +1

Query: 517 KNTNHIFIHIIPQ--GTPYILIPFIVIIGN 600
           K TN IF  +I    GT  ILI  + I+GN
Sbjct: 329 KVTNIIFFRVIGAIYGTALILITIVCIVGN 358


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 529 HIFIH--IIPQGTPYILIPFIVIIGNHQKYYSTWNFS 633
           H+F H  ++P   PY L P + I   +   Y++ +F+
Sbjct: 157 HLFTHADVLPPKKPYWLFPGLGISSKYAMLYTSHSFN 193


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +1

Query: 517 KNTNHIFIHIIPQ--GTPYILIPFIVIIGN 600
           K TN IF  +I    GT  ILI  + I+GN
Sbjct: 329 KVTNIIFFRVIGAIYGTALILITIVCIVGN 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,666,748
Number of Sequences: 5004
Number of extensions: 26197
Number of successful extensions: 58
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)