Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5a18
(583 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 177 7e-46
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 54 2e-08
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 32 0.053
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 30 0.28
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 1.5
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 1.5
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 3.5
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 3.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.6
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 25 6.1
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 25 6.1
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 25 8.1
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 25 8.1
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 177 bits (432), Expect = 7e-46
Identities = 82/145 (56%), Positives = 110/145 (75%)
Frame = +3
Query: 114 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 293
K+ YF K+ L ++Y F+V DNV SQQM +R LRG++ ++MGKNTM+R+A++ +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67
Query: 294 DNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 473
++ P LE+LLP ++GNVGFVFT DL EVR+ ++ N + APARP AIAPL V +PA NTG
Sbjct: 68 NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127
Query: 474 LGPEKTSFFQALSIPTKISKGTIEI 548
+ P KTSFFQAL IPTKI++GTIEI
Sbjct: 128 MEPGKTSFFQALGIPTKITRGTIEI 152
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 53.6 bits (123), Expect = 2e-08
Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 6/143 (4%)
Frame = +3
Query: 51 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 230
K RS TL++ ++ K+ F + Q LD + +I N+ + +++IR +
Sbjct: 3 KSRRSKVLTLAQTEKKGHEG-KAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWK 61
Query: 231 GSSIVLMGKNTMMRKAI-----KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLL 395
GS I MGK +M KA+ ++H +N L KLL G VG +FT EV
Sbjct: 62 GSRI-FMGKTKVMAKALGHTPEEEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YF 116
Query: 396 ENKVQAP-ARPGAIAPLSVVIPA 461
E+ VQ AR GA+AP + VIPA
Sbjct: 117 ESFVQNDFARAGAVAPFTHVIPA 139
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 32.3 bits (70), Expect = 0.053
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -1
Query: 580 HRASRCVHRXMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 425
H S ++ +IS P + L+GI AW E S R + T+ +AP
Sbjct: 279 HTVSSLINPEIISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 29.9 bits (64), Expect = 0.28
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 244 CSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLAS 351
CS EKT C++ K+ T+ +PS CC ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 1.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 310 RAGLLSRWSLMALRIIVFFPMSTILEPR 227
+A W LM + +++F + ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -1
Query: 388 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 263
L +T +S + PTLP + + S +G+LSR + + ++ I
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 3.5
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -1
Query: 484 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 314
+G PV + + G++ P AGAW L N L T + +NT P PL G F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194
Query: 313 SRAGL 299
S L
Sbjct: 195 SEEEL 199
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 3.5
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -1
Query: 403 LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 242
LFSN + R + R+ T L+ GN++ + W+L+A I F +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 4.6
Identities = 15/66 (22%), Positives = 29/66 (43%)
Frame = +1
Query: 280 SKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFP 459
S T T+ + C TS + L + +P ++ + TNC T + + P+ +
Sbjct: 518 SSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTIS 576
Query: 460 PTTPAS 477
+TP +
Sbjct: 577 SSTPVT 582
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 6.1
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 162 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA 308
K IVGA NVGS + +S + IV++ N +KA + +D N A
Sbjct: 22 KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 6.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 12 FVPHGSRAFCLVLKFHRSPYA 74
F+PHG+R + +LK+ R Y+
Sbjct: 313 FLPHGARIYNTLLKYMRYQYS 333
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 11 ICPARKSCVLSCP*ISSKSLRH 76
I PA++ LSCP + SK + H
Sbjct: 490 IVPAKERAYLSCPKVWSKIINH 511
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +1
Query: 277 PSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSF 456
PS + W T+ SR SR +S SP+ S + + K L L+ + +S++
Sbjct: 187 PSNSYWKTVIGSREMFEDSRKKTSSPSPSFASSKDAGTIPAIQKKKSL-LIEMMETESTY 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,974
Number of Sequences: 5004
Number of extensions: 53199
Number of successful extensions: 159
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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