Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5a15
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0787 + 11180794-11180958,11181051-11181230,11181396-111816... 29 3.2
01_01_0238 - 1976645-1977561,1977649-1977909,1978243-1978275,198... 29 3.2
07_01_0457 - 3468419-3468585,3469674-3469842,3470339-3470384,347... 28 5.6
06_03_0778 - 24523780-24526353 28 5.6
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225... 28 7.4
11_06_0390 - 23060034-23060399,23060486-23060573,23061767-230618... 28 7.4
07_03_0958 + 22881718-22881999,22882114-22883880 28 7.4
07_03_0758 - 21292205-21293329 28 7.4
04_04_0555 - 26210346-26211458,26211530-26211719,26211826-262119... 27 9.7
02_05_0787 - 31742685-31742702,31742703-31742744,31742993-317430... 27 9.7
>03_02_0787 +
11180794-11180958,11181051-11181230,11181396-11181611,
11181693-11181875,11182013-11182234,11182434-11182550,
11182682-11182825,11183198-11183299,11183762-11183830,
11184283-11184516
Length = 543
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +2
Query: 365 GIPENLIKALNIKKVSALTVVSNNAGVEDFGLGILLKSKQIKRMISSYVGENAEF 529
GIPE K + + A+T S +ED L +S +K SY+GE AEF
Sbjct: 472 GIPEPYEKLKEMTRGQAVTKDSIRQFIEDLDLPEAARSSLLKLTPHSYIGE-AEF 525
>01_01_0238 -
1976645-1977561,1977649-1977909,1978243-1978275,
1980556-1981345
Length = 666
Score = 29.1 bits (62), Expect = 3.2
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Frame = +2
Query: 290 YASAQEVVQDVSDGSKLLVGGFGLCGIPENLIKALNIKKVSALTVVSNN-AGVEDFG--L 460
Y E SD +L VGGFG + + +++ N V+ + N+ VE F +
Sbjct: 335 YEELDEATDGFSDARELGVGGFGT--VYKGILR--NGDTVAVKRLYKNSYKSVEQFQNEV 390
Query: 461 GILLKSKQIKRMISSYVGENAEFERQFLSGELEVELTPQGTLAERIRAGGA 613
GIL + + +++ + + R L L E P GTLA+ + G A
Sbjct: 391 GILSRLRH-PNLVTLFGCTSQTNSRDLL---LVYEFVPNGTLADHLHGGAA 437
>07_01_0457 -
3468419-3468585,3469674-3469842,3470339-3470384,
3470671-3470753,3471395-3471474,3472320-3472428,
3472667-3472735,3472874-3472924,3473059-3473184,
3473312-3473435,3473617-3473672,3473790-3473854,
3474438-3474513,3475050-3475108,3475275-3475365,
3475490-3475990
Length = 623
Score = 28.3 bits (60), Expect = 5.6
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Frame = +2
Query: 362 CGIP--ENLIKALNIKKVSALTVVSNNAGVEDFGLGILLKSKQIKRMISSYVGENAEFER 535
C +P E N ++ VV +A LL + +S+ VG + ER
Sbjct: 155 CTVPNMEGFTHCQNCDELKGSVVVGYDAFKAHLAQAALLSADAALPSVSTAVGFD---ER 211
Query: 536 QFLSGELEVELTPQGTLAERIRAGGAGIPA 625
L E+E++ P +R+RA A + A
Sbjct: 212 MLLHSEIEIKPNPHPERPDRLRAIAASLAA 241
>06_03_0778 - 24523780-24526353
Length = 857
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +2
Query: 395 NIKKVSALTVVSNNAGVEDFGLGILLKSKQIKRMISSYVGENAEFERQFLSGELEVE 565
+IK + L NN + DFG+ LL +Q+ +++ G ++L G+ ++
Sbjct: 654 DIKPDNILLDDKNNPKIADFGISRLLGDEQLHTTVTNVRGTRGYIAPEWLHGDRRID 710
>12_01_0298 -
2250517-2251235,2251331-2251577,2251615-2252951,
2256029-2256188
Length = 820
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 395 NIKKVSALTVVSNNAGVEDFGLGILLKSKQIKRMISSYVGENAEFERQFLSGELEV 562
N+K + L + A V DFGL +LL + Y+ E + + LS E +V
Sbjct: 623 NVKSTNVLLDKNGVACVADFGLALLLSPAHAIARLGGYIAPEQE-DNKRLSQEADV 677
>11_06_0390 -
23060034-23060399,23060486-23060573,23061767-23061843,
23062971-23063057
Length = 205
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = +2
Query: 173 IMTLNIRKLLDANYSKLV-----NSIGKIKSCATYATIIRKSKIYASA 301
I T I+K LD N ++ ++GK+ CA Y ++K+ +Y +A
Sbjct: 22 ITTEQIQKYLDENKQLILAILENQNLGKLAECAQYQAQLQKNLLYLAA 69
>07_03_0958 + 22881718-22881999,22882114-22883880
Length = 682
Score = 27.9 bits (59), Expect = 7.4
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 3/115 (2%)
Frame = +2
Query: 287 IYASAQEVVQDVSDGSKLLVGGFGLC--GI-PENLIKALNIKKVSALTVVSNNAGVEDFG 457
+Y+ D S+ KL GGFG G+ E + +K++S ++ G +++
Sbjct: 316 LYSQLATATNDFSEDGKLGEGGFGSVYRGVLSEPAGVHVAVKRISK----TSKQGRKEYA 371
Query: 458 LGILLKSKQIKRMISSYVGENAEFERQFLSGELEVELTPQGTLAERIRAGGAGIP 622
+ + S+ R + VG FL L EL P G+L + GGA +P
Sbjct: 372 SEVSIISRLRHRNLVQLVGW-CHGRGDFL---LVYELVPNGSLDAHLYGGGATLP 422
>07_03_0758 - 21292205-21293329
Length = 374
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 405 FFILRALIRFSGIPQSPKPP 346
FF R L++ SG+P SP PP
Sbjct: 277 FFSGRPLLQLSGLPPSPPPP 296
>04_04_0555 -
26210346-26211458,26211530-26211719,26211826-26211960,
26212072-26212169,26212262-26212425,26213558-26214032
Length = 724
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 639 VGVKKAGIPAPPARILSASVPCGVNSTSNSPLKNCLS 529
+G+ + PAP A + + GV+ S+ P KNCL+
Sbjct: 569 IGISGSDYPAPNAAVFRSIAILGVDGFSSLP-KNCLN 604
>02_05_0787 -
31742685-31742702,31742703-31742744,31742993-31743022,
31743337-31744183,31744431-31744560,31744682-31744814
Length = 399
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/38 (39%), Positives = 26/38 (68%)
Frame = -1
Query: 624 AGIPAPPARILSASVPCGVNSTSNSPLKNCLSNSAFSP 511
AG+ +PPA +A P ++++S SPL + +S++A SP
Sbjct: 218 AGLLSPPAMSSAALSP--MSTSSLSPLPSPMSSTALSP 253
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,860,280
Number of Sequences: 37544
Number of extensions: 268620
Number of successful extensions: 795
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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