Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5a15
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48178-4|CAA88202.1|  521|Caenorhabditis elegans Hypothetical pr...   188   4e-48
AF106581-7|ABC48241.1|  362|Caenorhabditis elegans Nuclear hormo...    34   0.100
U39472-10|AAZ82853.1|  354|Caenorhabditis elegans Serpentine rec...    29   3.8  
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ...    28   5.0  
U58727-5|AAB00585.1| 1106|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>Z48178-4|CAA88202.1|  521|Caenorhabditis elegans Hypothetical
           protein C05C10.3 protein.
          Length = 521

 Score =  188 bits (457), Expect = 4e-48
 Identities = 85/123 (69%), Positives = 107/123 (86%)
 Frame = +2

Query: 278 KSKIYASAQEVVQDVSDGSKLLVGGFGLCGIPENLIKALNIKKVSALTVVSNNAGVEDFG 457
           K+K++ SA+E V+D+ D +KLLVGGFGLCGIPENLI+A+       LT VSNNAGV+++G
Sbjct: 36  KAKVFNSAEEAVKDIPDNAKLLVGGFGLCGIPENLIQAITKTGQKGLTCVSNNAGVDNWG 95

Query: 458 LGILLKSKQIKRMISSYVGENAEFERQFLSGELEVELTPQGTLAERIRAGGAGIPAFFTP 637
           LG+LL+++QIK+MISSYVGEN EF RQ+LSGELE+E TPQGTLAERIRA GAG+PAF+TP
Sbjct: 96  LGLLLQTRQIKKMISSYVGENGEFARQYLSGELELEFTPQGTLAERIRAAGAGVPAFYTP 155

Query: 638 TGF 646
           TG+
Sbjct: 156 TGY 158


>AF106581-7|ABC48241.1|  362|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 135 protein.
          Length = 362

 Score = 33.9 bits (74), Expect = 0.100
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 190 KKTIRCQLFKACEFHWKDKKLCDLC 264
           K  I+C+  K+C  H+KD K+C  C
Sbjct: 40  KSAIKCRKDKSCRIHYKDPKICRFC 64


>U39472-10|AAZ82853.1|  354|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 36 protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 322 YILNYFLSTGIYFAFTNNCGISRT 251
           Y +NY++   IYFAFT N  + R+
Sbjct: 71  YCMNYYIFHDIYFAFTMNWSLYRS 94


>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
           protein Y80D3A.8 protein.
          Length = 1293

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
 Frame = +2

Query: 158 VSLSFIMTLNIRKLLDANYSKLVNSIGKIKSCATYATI-IRKSKIYASAQEVVQDVSDGS 334
           + +S     N+  LLD     L +SI ++KS      + I KS   +  Q +    +D  
Sbjct: 631 IGISASALRNVFSLLD-----LESSINQLKSVDGIVKVGIDKSSNKSELQSLWGSHNDDI 685

Query: 335 KLLVGGFGLCGIPENLIKALNIKKVSAL-TVVSNNAGVEDFGLGILLKSKQIKRMISSYV 511
             L G      + ++ I     K +S+  T + N A + D  +  + KSK ++ +ISS V
Sbjct: 686 ISLEGAIAKSKVFKSKIDVSKAKTLSSYSTPLQNLASIPDVKIDAVKKSKALEILISSLV 745

Query: 512 GENAE 526
             + +
Sbjct: 746 ASSVK 750


>U58727-5|AAB00585.1| 1106|Caenorhabditis elegans Hypothetical
           protein D1005.1 protein.
          Length = 1106

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
 Frame = +2

Query: 374 ENLIKALNIKKVSALTVVSNNAGVEDFGLGILLKSKQI-KRMISSYVGENAE-FERQFLS 547
           +++I+  N  +V  + ++    GVE++ +  LLK K++ K +++  +G  A+    +   
Sbjct: 699 DHVIRYQNDDRVKMIVLLGEVGGVEEYKIVDLLKQKKVTKPLVAWCIGTCADHITSEVQF 758

Query: 548 GELEVELTPQGTLA----ERIRAGGAGIPAFFTPTG 643
           G         G  A      +RA GA +P  F   G
Sbjct: 759 GHAGASANALGETAACKNAALRASGALVPESFDDLG 794


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,678,073
Number of Sequences: 27780
Number of extensions: 268491
Number of successful extensions: 943
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)