Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt5a08
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   4.3  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    22   5.7  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   9.9  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   9.9  

>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 304 LLEKAGQDASEPFEDVSHSSDARSLMKKY 390
           ++++A  D  E       SSD++SL+KKY
Sbjct: 1   MVDQAVLDKLETGFSKLSSSDSKSLLKKY 29


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = +1

Query: 358 SSDARSLMKKY 390
           SSD++SL+KKY
Sbjct: 3   SSDSKSLLKKY 13


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 473 SCACSLVHCGLKPARVC 423
           S AC +V C   P  +C
Sbjct: 53  SSACGIVQCAKGPDELC 69


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 186 VHARRTEVPVYAC*RRTNYPQRSLRRHK 269
           VH R ++ P+    +R      SLR HK
Sbjct: 25  VHTRPSKEPICNICKRVYSSLNSLRNHK 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,992
Number of Sequences: 438
Number of extensions: 2832
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)