Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt5a06
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141... 75 4e-14
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 65 5e-11
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266... 60 1e-09
05_01_0464 - 3670397-3670525,3671152-3671244,3671366-3671537,367... 38 0.005
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010... 33 0.24
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22... 33 0.24
10_04_0022 + 7687383-7687670,7688479-7688556,7689456-7689535,768... 31 0.95
11_04_0418 - 17443989-17444082,17445153-17445406,17445709-174457... 30 1.7
05_03_0411 - 13622241-13622591,13622838-13623476,13624031-136241... 30 1.7
06_02_0320 - 14347195-14347443,14347573-14347674,14347747-143478... 29 2.2
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 28 5.1
12_01_0061 + 514798-515967 27 8.9
06_01_0191 + 1478267-1478929,1480579-1480789,1482625-1482925,148... 27 8.9
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167... 27 8.9
01_06_1183 - 35176780-35177266,35179631-35181093 27 8.9
>05_01_0195 -
1409820-1409966,1410304-1410360,1410774-1410828,
1410902-1411002,1411051-1411205,1411395-1411459,
1411545-1411595,1411817-1411893,1412153-1412262,
1412355-1412403,1412528-1412572,1412689-1412813,
1413087-1413228,1413336-1413446
Length = 429
Score = 74.9 bits (176), Expect = 4e-14
Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 3/132 (2%)
Frame = +3
Query: 225 RETIRKLATEQISPLVKKMEDEHRI--DDGIRQMLFDNGLMGIETPVEYSGSGCNFLTMM 398
+E++ K A E I+P ++ + D + +++ D L G+ P EY G G ++
Sbjct: 39 KESVHKFAQETIAPHAAAIDASNHFPKDVNLWKLMGDFNLHGLTAPEEYGGMGLGYMYHC 98
Query: 399 LVVEELSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCT-EYAGSFCLTEPSS 575
+ +EE+SR +V H+ L + ++ G+ QK KYL KL + E+ G+ ++EP+S
Sbjct: 99 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKLKYLPKLISGEHVGALAMSEPNS 158
Query: 576 GSDAFALKTVAK 611
GSD ++K A+
Sbjct: 159 GSDVVSMKCKAE 170
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 64.9 bits (151), Expect = 5e-11
Identities = 40/138 (28%), Positives = 72/138 (52%), Gaps = 1/138 (0%)
Frame = +3
Query: 198 MLTEDELAMRETIRKLATEQISPLVKKMEDEHRIDDGIRQMLFDNGLMGIETPVEYSGSG 377
+LT +E ++R+ +R + ++I+P++ ++ L G+ G T Y G
Sbjct: 49 LLTTEEQSIRKNVRAIMEKEIAPIMATYWEKAEFPFHAIPKLSSLGVAG-GTIKGYGCPG 107
Query: 378 CNFLTMMLVVEELSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCTEYA-GSF 554
+ + + E++RVD + + ++ +H++L G+E QK+KYL L A G +
Sbjct: 108 LSITASAITMAEIARVDASCSTFILVHSSLAMVTIALCGSEVQKQKYLPSLAQLTAVGCW 167
Query: 555 CLTEPSSGSDAFALKTVA 608
LTEP+ GSDA +L T A
Sbjct: 168 ALTEPNHGSDASSLITTA 185
>06_02_0283 +
13726047-13726090,13726160-13726266,13726515-13726621,
13726735-13726812,13734948-13735071,13735585-13735658,
13735742-13735801,13737561-13737670,13737806-13737965,
13738218-13738360,13738461-13738605,13738727-13738819,
13740070-13740186
Length = 453
Score = 60.1 bits (139), Expect = 1e-09
Identities = 37/139 (26%), Positives = 72/139 (51%), Gaps = 1/139 (0%)
Frame = +3
Query: 198 MLTEDELAMRETIRKLATEQISPLVKKMEDEHRIDDGIRQMLFDNGLMGIETPVEYSGSG 377
+LTE+E ++ +R+ +++P++ K ++ + + G+ G T Y G
Sbjct: 60 LLTEEEKDLQIKVRQFMENEVAPIISKFWEKAEFPFHLIPKMSTLGIAG-GTIKGYGCPG 118
Query: 378 CNFLTMMLVVEELSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLC-TEYAGSF 554
+ + E++RVD ++A++ + + L +LG+E QK+KYL L + +
Sbjct: 119 LSGPACAMCFLEIARVDASIASFCLVQSCLAMVSIAQLGSEAQKEKYLRPLSKMQKVCVY 178
Query: 555 CLTEPSSGSDAFALKTVAK 611
L+EP+ GSDA +L T A+
Sbjct: 179 ALSEPNHGSDASSLNTTAR 197
>05_01_0464 -
3670397-3670525,3671152-3671244,3671366-3671537,
3671626-3671702,3671819-3671978,3672104-3672213,
3672321-3672380,3672492-3672629,3672922-3672999,
3673227-3673333,3674506-3674598,3674708-3674723
Length = 410
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Frame = +3
Query: 492 GTEEQKKKYLTKLCTEYA--GSFCLTEPSSGSDAFALKTVA 608
G+E QK+KYL L T++ G + LTEP GSDA +L+T A
Sbjct: 123 GSEAQKQKYLPSL-TQFRTIGCWALTEPDYGSDASSLRTAA 162
>11_06_0340 -
22500411-22500566,22500660-22500783,22500914-22501080,
22501157-22501336,22501544-22502427,22502728-22502843,
22503745-22504217
Length = 699
Score = 32.7 bits (71), Expect = 0.24
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 402 VVEELSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCT-EYAGSFCLTEPSSG 578
V+E D ++ + + +L + LGT++ + ++ + +Y G F +TE G
Sbjct: 138 VMEAAGGADISLGVKLGVQYSLWGGSIINLGTKKHRDRFFDGIDNLDYPGCFAMTELHHG 197
Query: 579 SDAFALKTVA 608
S+ AL+T A
Sbjct: 198 SNVQALQTTA 207
>06_01_0023 +
227014-227166,227893-228001,228096-228157,228284-228493,
228609-228696,228774-228936,229037-229235,229456-229653,
229887-230018,230182-230302,230453-230563,230710-230779,
230880-231063,231137-231346
Length = 669
Score = 32.7 bits (71), Expect = 0.24
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 444 YVDIHNTLVNSLFMKLGTEEQKKKYLTKLCT-EYAGSFCLTEPSSGSDAFALKTVA 608
YVD+H + GTEEQ+KK+L + G + TE GS+ L+T A
Sbjct: 103 YVDLHWGMFVPAIKGQGTEEQQKKWLPLAYRFQIIGCYAQTELGHGSNVQGLETTA 158
>10_04_0022 +
7687383-7687670,7688479-7688556,7689456-7689535,
7689876-7690095,7690444-7690677
Length = 299
Score = 30.7 bits (66), Expect = 0.95
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Frame = +3
Query: 201 LTEDELAMR--ETIRKLATEQISPLVKKMEDEHRIDDGIRQMLFD 329
L E+ELA R E+IRK ++++ K E + R+++GI+Q LFD
Sbjct: 158 LLEEELARRVEESIRKNVEDRLNSEDIKNEIKRRVEEGIKQ-LFD 201
>11_04_0418 -
17443989-17444082,17445153-17445406,17445709-17445783,
17446156-17446377,17446789-17446941,17447031-17447167,
17447615-17447933
Length = 417
Score = 29.9 bits (64), Expect = 1.7
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = +3
Query: 36 RFHS--ANANRIKMFPLRRVVGNKILEQWRSQATAAVGAKTQMKAYSTEVTPRPLTMLTE 209
RFH NANR+K+ +++ + ++ +EQ + + + AK QM+A + R L E
Sbjct: 200 RFHKNEQNANRLKVLEIQQKLSSEKIEQAK---ISHLAAKEQMEAAKVQREARKL----E 252
Query: 210 DELAMRETIRKLATEQISPLVKKMEDEHRI 299
E M ET +L S M DE ++
Sbjct: 253 VEARMYETYNRLLAVDTS----LMSDEEKV 278
>05_03_0411 -
13622241-13622591,13622838-13623476,13624031-13624177,
13624364-13624486,13624609-13624784,13625168-13625444
Length = 570
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 81 RRVVGNKILEQWRSQATAAVGAKTQMKAYSTEVTPRPLTMLTEDEL 218
R ++GNK+ ++W ++ A + ++K Y+TE P D+L
Sbjct: 232 RTILGNKLYQEWFNKRFNAAVFENELKWYATEPYPGKEDYTVADQL 277
>06_02_0320 -
14347195-14347443,14347573-14347674,14347747-14347851,
14347938-14348084,14348171-14348290,14348743-14348878,
14349198-14349328,14350854-14350928,14351040-14351139,
14351213-14351385,14351474-14351581,14351674-14351791,
14353477-14353970
Length = 685
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +3
Query: 426 DPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCTEYA--GSFCLTEPSSGSDAFALK 599
D ++A + +H L S LGT+ K+L+ Y G F +TE GS+ ++
Sbjct: 151 DHSLAIKIGVHFFLWGSAIKFLGTKRHHDKWLSDT-ENYVIKGCFSMTELGHGSNVRGIE 209
Query: 600 TVA 608
TVA
Sbjct: 210 TVA 212
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 28.3 bits (60), Expect = 5.1
Identities = 24/83 (28%), Positives = 41/83 (49%)
Frame = +3
Query: 51 NANRIKMFPLRRVVGNKILEQWRSQATAAVGAKTQMKAYSTEVTPRPLTMLTEDELAMRE 230
NANR+K+ +++ + ++ +EQ + + + AK QM+A + R L E E M E
Sbjct: 330 NANRLKVLEIQQKLSSEKIEQTK---ISHLAAKEQMEAAKVQREARKL----EVEARMYE 382
Query: 231 TIRKLATEQISPLVKKMEDEHRI 299
T +L S M DE ++
Sbjct: 383 TYNRLLVVDTS----LMSDEEKV 401
>12_01_0061 + 514798-515967
Length = 389
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 54 ANRIKMFPLRRVVGNKILEQWRSQATAAVG-AKTQMKAY 167
+NR ++ LRRV N++L R A AA ++ ++KAY
Sbjct: 14 SNRDGLYSLRRVPANRLLYPSRRAAEAATAKSEEEVKAY 52
>06_01_0191 +
1478267-1478929,1480579-1480789,1482625-1482925,
1483217-1483612,1483993-1484070,1484166-1484373
Length = 618
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 187 RGVTSVLYAFI*VFAPTAAVAWDL-HCSKILLPTTRRNG 74
RGV ++L P A A+D+ HCS+ L+P ++ NG
Sbjct: 255 RGVPAMLGIMATKRLPYPARAFDMAHCSRCLIPWSKYNG 293
>05_05_0362 +
24415257-24415481,24415585-24415835,24416659-24416755,
24417272-24417820,24418029-24418482,24418747-24418860,
24418940-24419023,24419499-24420067
Length = 780
Score = 27.5 bits (58), Expect = 8.9
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = +3
Query: 24 AEAARFHSANANRIKMFPLRRVVG---NKILEQWRSQATAAVGAKTQMKAYSTEVTPRPL 194
A+A +ANA R+K P RRVV NK ++ + Q +VG + M+ Y T +
Sbjct: 644 ADATEDDNANAERLKEMPQRRVVAVPRNKEEKEPKRQ-KKSVGVEGLMERYLDMRTKQ-- 700
Query: 195 TMLTEDELAM--RETIRKLATEQ 257
TEDE RE LA E+
Sbjct: 701 ---TEDEAVQLAREKEAHLAREK 720
>01_06_1183 - 35176780-35177266,35179631-35181093
Length = 649
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 78 LRRVVGNKILEQWRSQATAAVGAKTQMKAYSTEVTPRP 191
L + +G++ E+W + A VG K TPRP
Sbjct: 218 LEQEIGDRASEKWTASMIALVGLLRYAKCVLFSATPRP 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,999,405
Number of Sequences: 37544
Number of extensions: 364825
Number of successful extensions: 1119
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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