Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4p24
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    29   0.86 
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    26   4.6  
SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces pomb...    26   6.0  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   8.0  

>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 388 IEFSFNFSATFLSDSSFGTSKTTLCILSKSFKYCIVC 278
           +E S   S  + +D+S G S    C+L     +CI+C
Sbjct: 172 VEMSSALSNIYNTDASDGDSSDDSCLLEDEEDFCIIC 208


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -1

Query: 522 NWILIMCPYII*ICQHIFLLHPWDKALWLNR*GCFQAAQSTICAILSFLLIFQL 361
           NW   + PYII +   +FL     K+L+  R   F +    I  +L   LI+++
Sbjct: 425 NWTYPVGPYIIILLNGVFLFLQGYKSLYPFRLSLFVSYYMEIPIVLGLYLIWKI 478


>SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 316

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 153 VTVQYILLRSDLLKEFGWSIGALVAQACHASSAVMHIYKDDE 278
           +TV Y+    + L E GWSI  +  Q+ +       + +DDE
Sbjct: 49  LTVPYVQELVNPLDEIGWSIVQVQTQSSYIGWGTGSLKRDDE 90


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -1

Query: 693 IKCRTNKCALCIYYYFIHYCVFN*ITMM 610
           ++C  + C+L    Y++HY  F  +T++
Sbjct: 51  VECCASLCSLIFSKYYLHYKTFRILTII 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,696
Number of Sequences: 5004
Number of extensions: 55353
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)