Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4p24
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1071 + 30585106-30585288,30585737-30585919                       85   4e-17
02_05_1203 - 34934635-34934749,34934865-34934923,34935019-349351...    32   0.39 
03_05_0298 - 22873933-22874040,22874807-22875407,22875517-228755...    31   1.2  
05_02_0125 - 6852470-6852481,6852641-6853086,6853178-6853781,685...    30   1.6  
05_04_0310 + 20114415-20117819                                         30   2.1  
03_05_1030 - 29844628-29845059,29845161-29845245,29845989-298460...    30   2.1  

>04_04_1071 + 30585106-30585288,30585737-30585919
          Length = 121

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 49/117 (41%), Positives = 64/117 (54%)
 Frame = +3

Query: 150 NVTVQYILLRSDLLKEFGWSIGALVAQACHASSAVMHIYKDDEHTIQYLNDLDNMHKVVL 329
           +V VQY++LR DL     W +G++VAQ CHA+ A                       V L
Sbjct: 29  DVVVQYVVLRRDLAD--AWPLGSVVAQGCHAAVAA----------------------VTL 64

Query: 330 EVPNEESLRKVAEKLKENSILHKLWIEQPENIPTCLAIKPYPKDEVKKYVGKFKLYK 500
           EV  E  L+ +AEKL+   + HK+WIEQPENIPTC+A  P PK +V  +  K KL K
Sbjct: 65  EVKGETQLKNLAEKLETAGVRHKVWIEQPENIPTCIATAPCPKSQVSSFFKKLKLCK 121


>02_05_1203 -
           34934635-34934749,34934865-34934923,34935019-34935120,
           34935254-34935333,34935474-34935558,34935641-34935724,
           34935842-34935927,34936053-34936135,34936226-34936479
          Length = 315

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = +3

Query: 417 ENIPTCLAIKPYPKDEVKKYVGKFKLYKD 503
           E I  CL+IK    DEV +Y+G+ KLYK+
Sbjct: 279 ECIKKCLSIKYLVCDEVIQYIGEHKLYKE 307


>03_05_0298 -
           22873933-22874040,22874807-22875407,22875517-22875596,
           22875685-22875816
          Length = 306

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 417 ENIPTCLAIKPYP-KDEVKKYVGKFKLYKD 503
           E I  CL+IK    +DEV KY+G+ KLYK+
Sbjct: 72  ECIRRCLSIKYLIIRDEVIKYIGEHKLYKE 101


>05_02_0125 -
           6852470-6852481,6852641-6853086,6853178-6853781,
           6853970-6854187,6854283-6854437,6854561-6854772
          Length = 548

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = -3

Query: 418 SGCSIHNLCNIEFS--FNFSATFLSDSSFGT-SKTTLCILSKSFKYCIV--CSSS 269
           S C+IH++CN EF    +     +S +SFG   +    IL  S  Y  +  CSSS
Sbjct: 249 SNCTIHSICNGEFQVLIHLEKLIISAASFGNIDEVFSSILPSSLTYLDMSSCSSS 303


>05_04_0310 + 20114415-20117819
          Length = 1134

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 23/102 (22%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
 Frame = +3

Query: 222 VAQACHASSAV-MHIYKDDEHTIQYLNDLDNMHKVV----LEV--PNEESLRKVAEKLKE 380
           + +  H   ++  H+ K+  HT++ LND++++ + +    L+V    EE+ +    K + 
Sbjct: 687 IGKMIHLQGSIEFHVKKEKGHTLEDLNDMNDLRRKLHIKNLDVVASKEEASKAGLSKKQS 746

Query: 381 NSILHKLWIEQPENIPTCLA-----IKPYPKDE---VKKYVG 482
             +L   W    +++P+  A     +KP+P  E   +++Y G
Sbjct: 747 IKVLELEWNSPGKSVPSVDAEVLEGLKPHPDVEEIHIRRYHG 788


>03_05_1030 -
           29844628-29845059,29845161-29845245,29845989-29846087,
           29846478-29846566,29847583-29847633
          Length = 251

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
 Frame = +3

Query: 204 WSIGALVAQ-ACHASSAVMHIYKDDEHTIQYLNDLDNMHKVVLEVPNEESLRKVAE---K 371
           WS+  LV    C  + AV+  ++ +  T+QYL++   +   +L+  N   + + A    K
Sbjct: 25  WSLFMLVRNWECRLACAVLECHRFNLETVQYLDENKQLILAILDNQNNGKVEECARNQAK 84

Query: 372 LKENSI-LHKLWIEQPENIPTCLAIKPYPKD 461
           L+ N + L  +   QP   P   A+  YP +
Sbjct: 85  LQHNLMYLAAIADSQP---PQTAAMSQYPSN 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,214,761
Number of Sequences: 37544
Number of extensions: 284579
Number of successful extensions: 562
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)