Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4p24
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024876-7|AAF60890.4|  211|Caenorhabditis elegans Hypothetical ...   121   4e-28
Z78416-1|CAB01682.1|  425|Caenorhabditis elegans Hypothetical pr...    31   0.80 
AF293976-1|AAG17881.1|  425|Caenorhabditis elegans CAB-1 protein.      31   0.80 
U97016-2|ABC71840.1|  216|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U97016-1|ABC71839.1|  234|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF067947-5|AAO25993.2|  380|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z81049-3|CAB02846.2|  631|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF026213-3|AAP68945.1|  161|Caenorhabditis elegans Hypothetical ...    29   2.4  
AF026213-2|AAB71304.2|  191|Caenorhabditis elegans Hypothetical ...    29   2.4  
U28993-6|AAK31498.2|  639|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AF316599-1|AAG38591.1|  639|Caenorhabditis elegans paracaspase p...    29   4.3  
Z81075-6|CAB03049.1|  564|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z81070-13|CAB03009.1|  564|Caenorhabditis elegans Hypothetical p...    27   9.9  

>AC024876-7|AAF60890.4|  211|Caenorhabditis elegans Hypothetical
           protein Y94H6A.7 protein.
          Length = 211

 Score =  121 bits (292), Expect = 4e-28
 Identities = 54/113 (47%), Positives = 80/113 (70%)
 Frame = +3

Query: 159 VQYILLRSDLLKEFGWSIGALVAQACHASSAVMHIYKDDEHTIQYLNDLDNMHKVVLEVP 338
           V Y++LR DL  + GW +GA+  QA HA+SA M I+++D +T  Y ++LD+MHKV L V 
Sbjct: 101 VMYVILRRDLQTKLGWPLGAVCTQAAHAASASMWIFRNDPNTEAYTSNLDSMHKVTLGVD 160

Query: 339 NEESLRKVAEKLKENSILHKLWIEQPENIPTCLAIKPYPKDEVKKYVGKFKLY 497
           +EE ++KVA+KL   ++ HK+WIE  +  P C+A+KPYPK+EVK  +   KL+
Sbjct: 161 SEEEIKKVADKLTARNVDHKVWIE--DGFPVCIALKPYPKEEVKNALKGLKLF 211


>Z78416-1|CAB01682.1|  425|Caenorhabditis elegans Hypothetical
           protein C23H4.1 protein.
          Length = 425

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +3

Query: 264 YKDDEHTIQYLNDLDNMHKVVLEVPNEESLRKVAEKLKENSILHKLWIEQPENIPTCLAI 443
           YKDD+  ++YL +    H V  + PN E   +   + + N  L +L  EQ    P   A+
Sbjct: 107 YKDDDSYMEYLIEYMKSHPVPAQFPNFEQEAEQEHQDELNQWLEQLMNEQELLEPANAAV 166

Query: 444 K 446
           K
Sbjct: 167 K 167


>AF293976-1|AAG17881.1|  425|Caenorhabditis elegans CAB-1 protein.
          Length = 425

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +3

Query: 264 YKDDEHTIQYLNDLDNMHKVVLEVPNEESLRKVAEKLKENSILHKLWIEQPENIPTCLAI 443
           YKDD+  ++YL +    H V  + PN E   +   + + N  L +L  EQ    P   A+
Sbjct: 107 YKDDDSYMEYLIEYMKSHPVPAQFPNFEQEAEQEHQDELNQWLEQLMNEQELLEPANAAV 166

Query: 444 K 446
           K
Sbjct: 167 K 167


>U97016-2|ABC71840.1|  216|Caenorhabditis elegans Hypothetical
           protein B0261.4b protein.
          Length = 216

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +3

Query: 207 SIGALVAQACHASSAVMHIYKDDEHTIQYLNDLDNMHKVVLEVPNEESLRKVAE--KLKE 380
           S+ +LV+ A  + +AV   +       Q+ +D  N  K  L   +       AE  +LK 
Sbjct: 4   SLPSLVSSAVRSQNAVNTRFSSTMK--QFFDDEANFGKAELRPKHRPGRSWTAEELRLKS 61

Query: 381 NSILHKLW 404
           NS LHKLW
Sbjct: 62  NSDLHKLW 69


>U97016-1|ABC71839.1|  234|Caenorhabditis elegans Hypothetical
           protein B0261.4a protein.
          Length = 234

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +3

Query: 207 SIGALVAQACHASSAVMHIYKDDEHTIQYLNDLDNMHKVVLEVPNEESLRKVAE--KLKE 380
           S+ +LV+ A  + +AV   +       Q+ +D  N  K  L   +       AE  +LK 
Sbjct: 22  SLPSLVSSAVRSQNAVNTRFSSTMK--QFFDDEANFGKAELRPKHRPGRSWTAEELRLKS 79

Query: 381 NSILHKLW 404
           NS LHKLW
Sbjct: 80  NSDLHKLW 87


>AF067947-5|AAO25993.2|  380|Caenorhabditis elegans Hypothetical
           protein T10B5.2 protein.
          Length = 380

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
 Frame = +3

Query: 162 QYILLRSDLLKEFGWSIGALVAQACHASSAVMHIYKDDEHTIQYLNDL-----DNMHKVV 326
           QY+ L+  L  +  W +G LV        + +H+ +   + I  L+ +     +N   VV
Sbjct: 210 QYLNLQYILTPQLHWDLGFLVQNTTLDLYSAVHLIQQTFYCISDLHKVCLHQRNNTSIVV 269

Query: 327 L-EVPNEESLRKVAEKL--KENSILHKLWIEQPENIPTCLAIKPYPKDEVKKYVGK 485
           L    N E+ + +   +   +++ L  L+++Q  +    L  +P PK+ +  Y+ +
Sbjct: 270 LNNFFNSETRQNIRRNICTTKHNGLQPLYVQQARHARNKLEREPLPKNVINTYLSR 325


>Z81049-3|CAB02846.2|  631|Caenorhabditis elegans Hypothetical
           protein C48D1.1a protein.
          Length = 631

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 23/100 (23%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
 Frame = +3

Query: 99  VHISTLQKAILA*NKMSNVTVQYILLRSD--LLKEFGWSIGALVAQACHASSAVMHIYKD 272
           V I  + +A+L  N+ +   +QY+ +  D  L+K +   IG ++    H + + +HI +D
Sbjct: 106 VDIVRILEAVL--NEETRKNLQYLHIEKDQKLMKRWTAKIGNMLPSLTHLTMSDVHINED 163

Query: 273 DEHTIQYLNDLDNMHKVVLEVPNEESLRKVAEKLKENSIL 392
           D +  Q   +  N+  + +   N  ++  ++ +LK+  +L
Sbjct: 164 DFY--QLFGNFSNLRSLDISGTNILNIAGIS-RLKQLEVL 200


>AF026213-3|AAP68945.1|  161|Caenorhabditis elegans Hypothetical
           protein F08F1.4b protein.
          Length = 161

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -1

Query: 696 NIKCRTNKCALCIYYYFIHYCVFN*ITMMDVDDLFENYQINR*PMNLALTMYL--KTCEI 523
           +IKCR   C+ C+Y  +  Y + N         L +N+ IN   ++   +M++  +T +I
Sbjct: 11  SIKCRNQICSKCVYELYFEYNIINRKNSFSFQLLQKNF-INASQVSDESSMFILPQTTDI 69

Query: 522 NWILI 508
           +  LI
Sbjct: 70  SHFLI 74


>AF026213-2|AAB71304.2|  191|Caenorhabditis elegans Hypothetical
           protein F08F1.4a protein.
          Length = 191

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -1

Query: 696 NIKCRTNKCALCIYYYFIHYCVFN*ITMMDVDDLFENYQINR*PMNLALTMYL--KTCEI 523
           +IKCR   C+ C+Y  +  Y + N         L +N+ IN   ++   +M++  +T +I
Sbjct: 11  SIKCRNQICSKCVYELYFEYNIINRKNSFSFQLLQKNF-INASQVSDESSMFILPQTTDI 69

Query: 522 NWILI 508
           +  LI
Sbjct: 70  SHFLI 74


>U28993-6|AAK31498.2|  639|Caenorhabditis elegans Hypothetical
           protein F22D3.6 protein.
          Length = 639

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 366 EKLKENSILHKLWIEQPENIPTCLAIKPYPKDE 464
           E+L EN++ H+ ++E PE +  C  ++ Y  DE
Sbjct: 552 EELSENALNHRAFVEFPEEL-HCSDVREYNDDE 583


>AF316599-1|AAG38591.1|  639|Caenorhabditis elegans paracaspase
           protein.
          Length = 639

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 366 EKLKENSILHKLWIEQPENIPTCLAIKPYPKDE 464
           E+L EN++ H+ ++E PE +  C  ++ Y  DE
Sbjct: 552 EELSENALNHRAFVEFPEEL-HCSDVREYNDDE 583


>Z81075-6|CAB03049.1|  564|Caenorhabditis elegans Hypothetical
           protein F26E4.11 protein.
          Length = 564

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 402 WIEQPENIPTCLAIKPYPKDEVKK 473
           W+ Q  + PTC    P P+D++++
Sbjct: 362 WLAQDSSCPTCRCTIPSPQDQIRQ 385


>Z81070-13|CAB03009.1|  564|Caenorhabditis elegans Hypothetical
           protein F26E4.11 protein.
          Length = 564

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 402 WIEQPENIPTCLAIKPYPKDEVKK 473
           W+ Q  + PTC    P P+D++++
Sbjct: 362 WLAQDSSCPTCRCTIPSPQDQIRQ 385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,546,699
Number of Sequences: 27780
Number of extensions: 301053
Number of successful extensions: 856
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)