Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4p20
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    71   8e-14
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    69   3e-13
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    26   2.4  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   3.1  
SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|...    24   9.5  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    24   9.5  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 70.5 bits (165), Expect = 8e-14
 Identities = 33/73 (45%), Positives = 50/73 (68%)
 Frame = +2

Query: 131 VRDKLNNQVLFDKPTYXKLYKEVPQYXLITPAVVSERLKVRGSLARRALIELREKGLIXQ 310
           V+DK  +  +FDK    ++ KEVP +  I+ +V+ +R+K+ GSLAR A+ +L E+G+I +
Sbjct: 12  VKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQK 71

Query: 311 VVQHHGQVIYTRA 349
           V QH  Q IYTRA
Sbjct: 72  VDQHSKQAIYTRA 84


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 68.9 bits (161), Expect = 3e-13
 Identities = 32/72 (44%), Positives = 49/72 (68%)
 Frame = +2

Query: 131 VRDKLNNQVLFDKPTYXKLYKEVPQYXLITPAVVSERLKVRGSLARRALIELREKGLIXQ 310
           V+DK  +  +FDK    ++ KEVP +  I+ +V+ +R+K+ GSLAR A+ +L E+G+I +
Sbjct: 12  VKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQK 71

Query: 311 VVQHHGQVIYTR 346
           V QH  Q IYTR
Sbjct: 72  VDQHSKQAIYTR 83


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -3

Query: 179 HMWVYQTTPGCSTCHELFLWTTSXXXLCRHRIXPS 75
           +M  YQ TP     HE   WT S   L  H + PS
Sbjct: 152 YMRAYQLTPEFMAAHEEKTWTAS--SLNSHNLTPS 184


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -2

Query: 285  SSMSALLAREPRTFNLSDTTAGVISXYCGTSLYSXSYVGLSNNT--WLFNLSRTFP 124
            S+ S  L+ EP+TF+ S T +  IS     SL       LS++T   L + S T P
Sbjct: 946  SASSNTLSTEPKTFSSSSTLSESISSINTNSLTVKPESSLSSSTTSGLTSSSSTIP 1001


>SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 174

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 194 PCTVXHMWVYQTTPGCSTCHE 132
           P T  H++VY+    C+  HE
Sbjct: 7   PETQVHVFVYENVSNCAAIHE 27


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 382 HSLCDWIIALGRTRVDHLPMVLDYLXDET 296
           HSL  ++ +     +   PM +DY  DET
Sbjct: 310 HSLLSYVFSRQTQNIACEPMYIDYRKDET 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,320,439
Number of Sequences: 5004
Number of extensions: 21480
Number of successful extensions: 57
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)