Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4p20
(391 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 92 2e-19
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 91 2e-19
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 56 1e-08
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665... 31 0.32
12_01_0890 + 8591718-8591720,8591809-8591919,8592001-8592525 29 0.99
05_03_0438 - 14019214-14019723,14019876-14019918,14023196-14023422 29 1.3
11_04_0025 + 12382485-12382823,12382835-12382894,12382960-123830... 29 1.7
02_02_0584 - 11853149-11853573,11853673-11853787,11853868-118539... 28 3.0
03_05_0350 + 23368111-23368219,23368519-23368526,23368650-233686... 27 5.3
01_05_0662 - 24103475-24103735,24103831-24104085,24104280-241044... 27 5.3
12_01_0864 - 8205371-8205913,8206304-8206452,8206677-8206737,820... 26 9.2
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338... 26 9.2
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 91.9 bits (218), Expect = 2e-19
Identities = 43/73 (58%), Positives = 56/73 (76%)
Frame = +2
Query: 134 RDKLNNQVLFDKPTYXKLYKEVPQYXLITPAVVSERLKVRGSLARRALIELREKGLIXQV 313
++K+NN VLFD+ TY KL EVP+Y ITP+V+SERL++ GSLARRA+ +L ++GLI V
Sbjct: 34 KEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAMKDLMDRGLIRMV 93
Query: 314 VQHHGQVIYTRAT 352
H Q IYTRAT
Sbjct: 94 SVHCSQQIYTRAT 106
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 91.5 bits (217), Expect = 2e-19
Identities = 43/73 (58%), Positives = 55/73 (75%)
Frame = +2
Query: 134 RDKLNNQVLFDKPTYXKLYKEVPQYXLITPAVVSERLKVRGSLARRALIELREKGLIXQV 313
++K+NN VLFD+ TY KL EVP+Y ITP+V+SERL++ GSLARRA+ +L +GLI V
Sbjct: 34 KEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDLMTRGLIRMV 93
Query: 314 VQHHGQVIYTRAT 352
H Q IYTRAT
Sbjct: 94 SVHSSQQIYTRAT 106
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 55.6 bits (128), Expect = 1e-08
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = +2
Query: 134 RDKLNNQVLFDKPTYXKLYKEVPQYXLITPAVVSERLK 247
++K+NN VLFDK TY KL EVP+Y ITP+V+SERL+
Sbjct: 968 KEKVNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLR 1005
Score = 39.1 bits (87), Expect = 0.001
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +2
Query: 248 VRGSLARRALIELREKGLIXQVVQHHGQVIYTRAT 352
+ GSLAR+A+ +L +G I V H Q+IYTRAT
Sbjct: 1090 INGSLARQAIKDLESRGAIRVVSVHSSQLIYTRAT 1124
>07_02_0028 +
11964941-11964991,11965259-11966101,11966249-11966560,
11966640-11967073,11967500-11967941
Length = 693
Score = 31.1 bits (67), Expect = 0.32
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 215 ITPAVVSERLKVRGSLARRALIELREKGLIXQVVQHHGQVIYTRATKGD 361
+TPAV E+ + + AR+ L + RE I +QH+ Q+++ +K D
Sbjct: 613 LTPAVYLEQHRFKLEKARQRLTDHRECQNIEATIQHNQQLVHVEKSKLD 661
>12_01_0890 + 8591718-8591720,8591809-8591919,8592001-8592525
Length = 212
Score = 29.5 bits (63), Expect = 0.99
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 215 ITPAVVSERLKVRGSLARRALIELREKGLIXQVVQHHGQVIYTRATKGD 361
ITPAV E+ + + A++ L + RE+ I +Q + Q++Y +K D
Sbjct: 116 ITPAVYLEQHQFKLERAKQRLADRRERMDIEATIQANRQLVYEEKSKLD 164
>05_03_0438 - 14019214-14019723,14019876-14019918,14023196-14023422
Length = 259
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +2
Query: 212 LITPAVVSERLKVRGSLARRALIELREKGLIXQVVQHHGQVIYTRATKGD 361
++TPA E+ + + A++ L+E RE+ I +Q + Q+++ +K D
Sbjct: 167 VLTPAAYFEQHQFKLEKAKQRLVERRERKEIEATIQANRQLVHEEKSKLD 216
>11_04_0025 +
12382485-12382823,12382835-12382894,12382960-12383073,
12383187-12383837
Length = 387
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +2
Query: 212 LITPAVVSERLKVRGSLARRALIELREKGLIXQVVQHHGQVIYTRATKGD 361
+ITPA+ E+ + + A++ + + RE+ +I +Q + Q+++ K D
Sbjct: 237 IITPAIYLEQHQFKLEKAQQRIADRRERKVIEATIQANRQLVHEEKAKLD 286
>02_02_0584 -
11853149-11853573,11853673-11853787,11853868-11853981,
11854049-11854108,11854265-11854600,11854681-11854724,
11854776-11855507,11855736-11855921,11856012-11856153,
11856250-11856300
Length = 734
Score = 27.9 bits (59), Expect = 3.0
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +2
Query: 212 LITPAVVSERLKVRGSLARRALIELREKGLIXQVVQHHGQVIYTRATKGD 361
++TPAV E+ + + A+ L E RE+ I +Q + Q+++ +K D
Sbjct: 599 ILTPAVYLEQHQFKLKKAKLRLAERRERKDIEATIQANRQLVHEEKSKLD 648
>03_05_0350 +
23368111-23368219,23368519-23368526,23368650-23368658,
23368768-23368839,23368978-23369097,23369638-23370058,
23370131-23370285,23370461-23370625,23370822-23370825,
23371739-23371799,23371933-23372035,23372422-23372854,
23372978-23373120,23373608-23373740,23375567-23375576,
23375852-23375975,23376595-23377012,23377153-23377343,
23377569-23377811
Length = 973
Score = 27.1 bits (57), Expect = 5.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 261 WREEHSSNLGKKVSSXR*SNTMGR*STRVRPR 356
W ++ SS+ G K+ + R SNT + S + PR
Sbjct: 528 WMQKDSSSKGNKIGNTRSSNTPSKFSGCILPR 559
>01_05_0662 -
24103475-24103735,24103831-24104085,24104280-24104451,
24104535-24104762,24104864-24104997,24105101-24105184,
24105273-24105563,24105660-24105992,24106081-24106334,
24106435-24106591,24106674-24106777,24106879-24107039,
24107216-24107529,24107614-24107895,24107991-24108292,
24108367-24108457,24108566-24108619,24108785-24108861,
24108963-24109207,24109322-24109410,24110811-24111254
Length = 1443
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 142 LVTNFSFGPLLXXGFAATGSFLL 74
+V + +FGPL FAA G F+L
Sbjct: 662 MVVSHTFGPLSLLAFAALGGFIL 684
>12_01_0864 -
8205371-8205913,8206304-8206452,8206677-8206737,
8206815-8206917,8207197-8207492
Length = 383
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 212 LITPAVVSERLKVRGSLARRALIELREKGLIXQVVQHHGQVIYTRATKGD 361
++TP V E+ + + A+ L E RE+ I +Q + Q+++ +K D
Sbjct: 280 ILTPGVYLEQHQFKLEKAKLRLAERRERKDIEATIQANRQLVHEEKSKLD 329
>03_06_0576 +
34832900-34832911,34833006-34833122,34833752-34833810,
34833901-34833960,34834197-34834250,34834332-34834380,
34834493-34834540,34834889-34834954,34835591-34835641,
34835732-34835851,34835921-34836005,34836428-34836509,
34836666-34836774,34837005-34837051,34837131-34837188,
34839114-34839220,34839700-34839765,34839833-34839879,
34839977-34840042,34840146-34840243,34840344-34840469,
34840551-34840835,34840920-34840985,34841079-34841228
Length = 675
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 248 VRGSLARRALIELREKGLIXQVVQHHGQVIYT 343
+RG +RAL +R+ G I +VVQ+ Q Y+
Sbjct: 239 IRGIGGQRALKLIRQHGYIEEVVQNLSQTRYS 270
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,167,468
Number of Sequences: 37544
Number of extensions: 153978
Number of successful extensions: 301
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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