Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4p20
         (391 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...   126   6e-30
Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AC024776-7|AAK68469.1|  411|Caenorhabditis elegans Nuclear pore ...    26   8.2  
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ...    26   8.2  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score =  126 bits (304), Expect = 6e-30
 Identities = 68/118 (57%), Positives = 75/118 (63%)
 Frame = +2

Query: 17  MPPXKDAKASAKQPQKTXXKKEXSXXXXXXXXXXXXXXVRDKLNNQVLFDKPTYXKLYKE 196
           MPP KD K     P K   KKE S              VRDKLNN VLFD+ TY KLYKE
Sbjct: 1   MPPKKDPKGGKAPPSK---KKEGSGGGKAKKKKWSKGKVRDKLNNMVLFDQATYDKLYKE 57

Query: 197 VPQYXLITPAVVSERLKVRGSLARRALIELREKGLIXQVVQHHGQVIYTRATKGDDPV 370
           V  Y LITP+VVSERLKVR SLA+  L EL+ KGL+  VV HHGQV+YTRATK  D +
Sbjct: 58  VITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHHHGQVVYTRATKEADVI 115


>Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical
           protein F46F3.4 protein.
          Length = 769

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 242 LKVRGSLARRALIELREKGLIXQVVQHHGQVIYTR 346
           L V+GS+ + A +ELR   +  Q +  H + +Y R
Sbjct: 191 LNVQGSMLKEAQLELRNASMRAQSLNKHLEEMYRR 225


>AC024776-7|AAK68469.1|  411|Caenorhabditis elegans Nuclear pore
           complex protein protein8, isoform a protein.
          Length = 411

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 291 SLSSMSALLAREPRTFNLSDTTAGVISXYCGTSLYSXSYVGLSNNT 154
           S++S+ AL A +    NL  TTA  +  Y   S    S + + NN+
Sbjct: 313 SITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 358


>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
           complex protein protein8, isoform b protein.
          Length = 1090

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 291 SLSSMSALLAREPRTFNLSDTTAGVISXYCGTSLYSXSYVGLSNNT 154
           S++S+ AL A +    NL  TTA  +  Y   S    S + + NN+
Sbjct: 228 SITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,493,608
Number of Sequences: 27780
Number of extensions: 132857
Number of successful extensions: 270
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)