Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4p20
         (391 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   2.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   3.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   6.6  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 78  RXDPVAAKPXXRSGPKEKFVTS*TTRC 158
           R  P++ K   RSG +E+F+     RC
Sbjct: 79  RYQPISYKWITRSGTREQFIDM-VARC 104


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 171 GLSNNTWLFNLSRTFP 124
           GLS+  W++  S T P
Sbjct: 542 GLSHGNWIYPASMTIP 557


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 5   SXSKMPPXKDAKASAKQPQKTXXKKE 82
           S S+    K  KAS K+ +K+  KKE
Sbjct: 589 SGSRFTIYKANKASKKKREKSSAKKE 614


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 168 LSNNTWLFNLSRTFPLDHFXXXAL 97
           LSN       +RT P DH+   A+
Sbjct: 248 LSNKQRFEYFTRTIPSDHYQVKAM 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,459
Number of Sequences: 438
Number of extensions: 1751
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)