Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4p16
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0050 - 12819929-12820468,12820606-12820824,12820900-12821118 33 0.30
06_01_0080 + 644021-645463 30 2.1
04_04_0961 + 29715938-29716034,29716918-29717133,29717438-297177... 29 2.8
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 29 3.7
06_03_0947 + 26248378-26248494,26248600-26248764,26248843-262489... 29 3.7
05_02_0052 + 6124880-6124956,6125097-6125250,6125327-6125920,612... 29 3.7
07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660 29 4.9
12_01_0779 + 7129879-7130398,7130585-7130664 28 6.5
06_03_0157 + 17337641-17337896,17337975-17338082,17338643-173389... 28 6.5
06_03_0020 + 15515768-15517696 28 6.5
07_03_1045 + 23528768-23528879,23528979-23530399 28 8.6
02_05_1348 + 35840197-35841291 28 8.6
02_01_0090 - 637141-640263 28 8.6
01_05_0176 - 18957676-18958067,18958139-18958242,18958358-189584... 28 8.6
>11_04_0050 - 12819929-12820468,12820606-12820824,12820900-12821118
Length = 325
Score = 32.7 bits (71), Expect = 0.30
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 597 GHPQAIPQEDHPARHRSYPGVSPRQPWLLQPGA-PPWTASGP 719
G P+ P+E+ P + P V R P L +PG+ PPW P
Sbjct: 26 GKPEEKPKEEAPPALPTRPTVRGRPPSLQRPGSPPPWVHRSP 67
>06_01_0080 + 644021-645463
Length = 480
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +1
Query: 409 MTEVGKSGSLRDIKVVHMHTEKDAAYVTPECKDIFRSVSLFMAANVRKSVAEGRSDAIPI 588
+T +GK GS +K+VH E + E D+ +SV + +++ +E +
Sbjct: 173 VTYIGKGGSGNFVKMVHNGIEYGDMQLISEAYDVLKSVGKLTNSELQQVFSEWNKGELLS 232
Query: 589 FLQDI 603
FL +I
Sbjct: 233 FLIEI 237
>04_04_0961 +
29715938-29716034,29716918-29717133,29717438-29717776,
29718247-29719274,29719465-29719551,29719636-29720043,
29720394-29720558,29720742-29721036,29721131-29721345,
29721838-29722143,29722474-29722537,29722644-29722883,
29722959-29723062
Length = 1187
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +1
Query: 403 NAMTEVGKSGSLRDIKVVHMHTEKDAAYVTPECKDIFRSVSLFMAANVRKSVAEGRSDAI 582
+A+ E+ ++ + DI++ H + +P KD+ V M + V G+S +
Sbjct: 381 DAVIEIPRNDTEYDIEIDHGIFSWELETTSPTLKDVELKVKRGMKVAICGMVGSGKSSLL 440
Query: 583 PIFLQDIPKL 612
L ++PKL
Sbjct: 441 SSILGEMPKL 450
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = -3
Query: 485 YAASFSVCIWTTLMSRNDPLF---PTSVMA-LRRGTGVAAAPWANTVSPDLR 342
+ + F +C+WT R+D +F P S+ A L+RG + WA +PD R
Sbjct: 341 FQSFFLLCLWTLWNHRHDVVFRERPPSISACLQRGLSESTL-WAAMFTPDDR 391
>06_03_0947 +
26248378-26248494,26248600-26248764,26248843-26248952,
26249065-26249179,26249310-26249408,26249485-26249694,
26249802-26250965
Length = 659
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +3
Query: 597 GHPQAIPQEDHPARHRSYPGVSPRQPWLLQP 689
G + ED+P R P P QPW + P
Sbjct: 486 GFKRPAATEDYPVRTNKIPRPIPEQPWYMNP 516
>05_02_0052 +
6124880-6124956,6125097-6125250,6125327-6125920,
6126344-6126757,6126835-6126846
Length = 416
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = -3
Query: 566 PSATDLRTFAAINNDTDLNMSLHSGVTYAASFSVCIWTTLMSRNDPLFPTSVMALRRGTG 387
PS++ R+F+A T + +S + AA+ + C T + L P A RR +G
Sbjct: 97 PSSSSFRSFSAGTTTTTTSRDDNSSLMLAAAAASCHHQTTEVSSQILLPRPGQAARRSSG 156
Query: 386 VAAAPWANT 360
A A T
Sbjct: 157 GHGAAAAAT 165
>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
Length = 1369
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 360 RVRPGRGRHAGASSQC 407
R+RPGRG HA S++C
Sbjct: 35 RLRPGRGTHAACSTKC 50
>12_01_0779 + 7129879-7130398,7130585-7130664
Length = 199
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +3
Query: 621 EDHPARHRSYPGVSPRQPWLLQPGAPPWTASGP 719
+DHP H S P P P P P W S P
Sbjct: 144 DDHPQSHHSPPPPPPPMP---SPSIPNWKISSP 173
>06_03_0157 +
17337641-17337896,17337975-17338082,17338643-17338908,
17339933-17340021,17340095-17340198,17340403-17340508,
17340600-17340675,17340772-17340883,17341719-17342250,
17343097-17343131,17343924-17343984,17344054-17344132,
17344266-17344349
Length = 635
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 142 VKLNLNNRMSVITKIVPQVSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQ 288
+KL+ + +I+P + L FG + SAF + +D F Y QSL +
Sbjct: 232 IKLHSKLERKKMHRIIP--NRLTFGSVRSAFDDIDADDPDFLYIQSLGE 278
>06_03_0020 + 15515768-15517696
Length = 642
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +1
Query: 367 AQGAAATPVPLLNAMTEVGKSGSLRDIKVVHMHTEKDAAYVTPECKDIFRSVSL 528
A G A PV + + + G+ D +++H H P C +F S SL
Sbjct: 60 AAGLTADPVAVSRLIKLCVRHGTPSDGRLIHRHVFGGGDVAAPSCSSLFVSNSL 113
>07_03_1045 + 23528768-23528879,23528979-23530399
Length = 510
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 515 LNMSLHSGVTYAASFSVCIWTTLMSRNDPLFPTSVMALRRGTGVAA 378
+ +S+ S + Y A FS+ + + +FP V AL GVAA
Sbjct: 382 IGLSIASTLAYVAFFSIGLGPITWVYSSEIFPLQVRALGCSLGVAA 427
>02_05_1348 + 35840197-35841291
Length = 364
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +3
Query: 372 GRGRHAGASSQCHDRSRKKWIVARHQSRPY--AHRKGC-GICNPGMQG 506
GR ASS +++++ R +RPY RK C + +P +QG
Sbjct: 255 GRRAFDAASSDSESEDHQRFLLLRDWARPYLAGDRKRCFALADPALQG 302
>02_01_0090 - 637141-640263
Length = 1040
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +1
Query: 367 AQGAAATPVPLLNAMTEVGKSGSLRDIKVV----HMHTEKDA 480
A+ AAA P + EVG G LR +V +MH E DA
Sbjct: 748 AEAAAAAPELTAEVLKEVGLLGRLRHRNIVRLLGYMHNEADA 789
>01_05_0176 -
18957676-18958067,18958139-18958242,18958358-18958483,
18959495-18959628,18959757-18959894,18960835-18960964,
18961316-18961357,18964741-18965024
Length = 449
Score = 27.9 bits (59), Expect = 8.6
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 2/97 (2%)
Frame = -3
Query: 569 RPSATDLRTFAAINNDTDLNMSLHSGVTYAASFSVCIWTTLMSRNDPLFPTSVMALRRGT 390
R AT A+ + + S H A S ++ S + P +V A+ T
Sbjct: 3 RGGATAASAARALRSRLIPDTSHHPATALAPIASPRSSSSSSSSSAPTIAAAVPAVAEAT 62
Query: 389 GVAAAP--WANTVSPDLRHFSNASFAVEYSGFLSRGC 285
AAA A +VS LRH+ F + + +GC
Sbjct: 63 AAAAAVSRQAGSVSDALRHYGRCYFELSKARLSFQGC 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,951,576
Number of Sequences: 37544
Number of extensions: 468877
Number of successful extensions: 1531
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1530
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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