Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4p16
(721 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28928-9|AAN63431.1| 471|Caenorhabditis elegans Hypothetical pr... 98 5e-21
Z46934-7|CAA87047.1| 472|Caenorhabditis elegans Hypothetical pr... 77 2e-14
AL032632-12|CAA21589.3| 333|Caenorhabditis elegans Hypothetical... 55 6e-08
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 29 4.4
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 29 4.4
Z77664-2|CAB01217.1| 643|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z73970-5|CAA98248.1| 643|Caenorhabditis elegans Hypothetical pr... 28 7.7
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 28 7.7
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 28 7.7
M98552-2|AAL11480.1| 921|Caenorhabditis elegans Hypothetical pr... 28 7.7
M98552-1|AAA28205.2| 927|Caenorhabditis elegans Hypothetical pr... 28 7.7
>U28928-9|AAN63431.1| 471|Caenorhabditis elegans Hypothetical
protein C44B7.10 protein.
Length = 471
Score = 98.3 bits (234), Expect = 5e-21
Identities = 53/132 (40%), Positives = 76/132 (57%)
Frame = +1
Query: 298 RKPEYSTAKEAFEKCLKSGLTVFAQGAAATPVPLLNAMTEVGKSGSLRDIKVVHMHTEKD 477
+ P+ + EA + +KSG VF G AATP PLL +++E + +L IK+ H+H E
Sbjct: 36 KSPKVVSLAEA-TRDIKSGDNVFVHGIAATPTPLLQSLSEHAVANNLNKIKLHHLHLEGA 94
Query: 478 AAYVTPECKDIFRSVSLFMAANVRKSVAEGRSDAIPIFLQDIPKLFHRKIIQPDIALIQV 657
+ +D RS SLF N+R V G +D FL ++P LF + I+ + +LIQV
Sbjct: 95 TPWTAEGVRDRIRSNSLFTGHNLRACVNNGIADFNSCFLYEVPLLFRKGAIKLNASLIQV 154
Query: 658 SPPDNHGYCSLG 693
SPPD G+CSLG
Sbjct: 155 SPPDAFGFCSLG 166
>Z46934-7|CAA87047.1| 472|Caenorhabditis elegans Hypothetical
protein ZK1320.9 protein.
Length = 472
Score = 76.6 bits (180), Expect = 2e-14
Identities = 43/130 (33%), Positives = 68/130 (52%)
Frame = +1
Query: 304 PEYSTAKEAFEKCLKSGLTVFAQGAAATPVPLLNAMTEVGKSGSLRDIKVVHMHTEKDAA 483
P+Y +A EA + S ++ A+ P LL A+ S +L +I++ H+ +
Sbjct: 40 PKYVSADEALAM-VNSDSDIYVGNHASAPNVLLEALCRRVDSANLNNIRMSHLILSGNCP 98
Query: 484 YVTPECKDIFRSVSLFMAANVRKSVAEGRSDAIPIFLQDIPKLFHRKIIQPDIALIQVSP 663
P+ ++ SLF+ RK+V G +D PIFL ++P L+ + D ALI VSP
Sbjct: 99 QFDPKYHGKIQNNSLFICPGNRKNVNLGAADYTPIFLSEVPSLYTSGTLNVDFALITVSP 158
Query: 664 PDNHGYCSLG 693
PD G+C+LG
Sbjct: 159 PDELGFCTLG 168
>AL032632-12|CAA21589.3| 333|Caenorhabditis elegans Hypothetical
protein Y11D7A.1 protein.
Length = 333
Score = 54.8 bits (126), Expect = 6e-08
Identities = 25/57 (43%), Positives = 35/57 (61%)
Frame = +1
Query: 523 SLFMAANVRKSVAEGRSDAIPIFLQDIPKLFHRKIIQPDIALIQVSPPDNHGYCSLG 693
SLF+ RK+V G +D PIFL ++P ++ + ALI VSPPD G+C+LG
Sbjct: 54 SLFICPGNRKNVKLGAADYTPIFLSEVPSVYTSGTLNVHFALITVSPPDELGFCTLG 110
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/63 (31%), Positives = 24/63 (38%)
Frame = -3
Query: 584 GMASERPSATDLRTFAAINNDTDLNMSLHSGVTYAASFSVCIWTTLMSRNDPLFPTSVMA 405
G E+PSA R D+ SG A+FSV I + DP VMA
Sbjct: 46 GFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRI-DHEDPHVQALVMA 104
Query: 404 LRR 396
R
Sbjct: 105 PTR 107
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/63 (31%), Positives = 24/63 (38%)
Frame = -3
Query: 584 GMASERPSATDLRTFAAINNDTDLNMSLHSGVTYAASFSVCIWTTLMSRNDPLFPTSVMA 405
G E+PSA R D+ SG A+FSV I + DP VMA
Sbjct: 46 GFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRI-DHEDPHVQALVMA 104
Query: 404 LRR 396
R
Sbjct: 105 PTR 107
>Z77664-2|CAB01217.1| 643|Caenorhabditis elegans Hypothetical
protein C29A12.6 protein.
Length = 643
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +1
Query: 142 VKLNLNNRMSVITKIVPQVSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQP 291
+ ++ RM+ T I P+ + + + +S + + K+ RSY T T++ S+P
Sbjct: 329 IPMSTTRRMTTTT-IRPKTTKKYLSRSTSKYDAKKTTRSYQTTTRTTSKP 377
>Z73970-5|CAA98248.1| 643|Caenorhabditis elegans Hypothetical
protein C29A12.6 protein.
Length = 643
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +1
Query: 142 VKLNLNNRMSVITKIVPQVSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQP 291
+ ++ RM+ T I P+ + + + +S + + K+ RSY T T++ S+P
Sbjct: 329 IPMSTTRRMTTTT-IRPKTTKKYLSRSTSKYDAKKTTRSYQTTTRTTSKP 377
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = +1
Query: 280 LSQPLDRKPEYSTAKEAFEKCLKSGLTVFAQGAAATPVPLLNAMTEVGKSGSLRDIKVVH 459
+ +P DR ++ + E E L + A A+PVP ++ V ++ + + H
Sbjct: 4037 VQEPEDRPENFAESHEKTEATSDENLFESDKYAPASPVPSEDSSNRVIETTTTTTVTREH 4096
Query: 460 MHTEKDAAYV 489
E D +YV
Sbjct: 4097 FEPEDDHSYV 4106
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = +1
Query: 280 LSQPLDRKPEYSTAKEAFEKCLKSGLTVFAQGAAATPVPLLNAMTEVGKSGSLRDIKVVH 459
+ +P DR ++ + E E L + A A+PVP ++ V ++ + + H
Sbjct: 4037 VQEPEDRPENFAESHEKTEATSDENLFESDKYAPASPVPSEDSSNRVIETTTTTTVTREH 4096
Query: 460 MHTEKDAAYV 489
E D +YV
Sbjct: 4097 FEPEDDHSYV 4106
>M98552-2|AAL11480.1| 921|Caenorhabditis elegans Hypothetical
protein ZK370.3b protein.
Length = 921
Score = 27.9 bits (59), Expect = 7.7
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = -2
Query: 552 FADVRGHKQRYRSEYVLAFR--GYICRILFGVHMDDFDVSQRSTFSYFGHGIEKRHRRGG 379
F ++G +++RSE+VLA G I + L FD + T +E+ R G
Sbjct: 420 FNKMKGVYEKFRSEHVLALTKLGDIQKQLEASEKSKFDKDEEIT--ALNRKVEEAQREAG 477
Query: 378 RALGE-HGQSG 349
RAL + G +G
Sbjct: 478 RALTKAEGDAG 488
>M98552-1|AAA28205.2| 927|Caenorhabditis elegans Hypothetical
protein ZK370.3a protein.
Length = 927
Score = 27.9 bits (59), Expect = 7.7
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = -2
Query: 552 FADVRGHKQRYRSEYVLAFR--GYICRILFGVHMDDFDVSQRSTFSYFGHGIEKRHRRGG 379
F ++G +++RSE+VLA G I + L FD + T +E+ R G
Sbjct: 420 FNKMKGVYEKFRSEHVLALTKLGDIQKQLEASEKSKFDKDEEIT--ALNRKVEEAQREAG 477
Query: 378 RALGE-HGQSG 349
RAL + G +G
Sbjct: 478 RALTKAEGDAG 488
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,968,711
Number of Sequences: 27780
Number of extensions: 369566
Number of successful extensions: 1089
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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