Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4p15
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    27   3.5  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    26   6.1  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   6.1  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    26   6.1  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    25   8.0  

>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -2

Query: 676 FYSNLRLSKLLHVSTLVLVDM*RISLSLE*GQFPNIYSLILKPLYMW 536
           FY NLR   LL   T V++   R +L      F N   L++   Y W
Sbjct: 157 FYKNLRYYLLLTFLTCVVIAYLRFALRTM--SFSNFKELVISLTYFW 201


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 348 YGLDKSEIAKNLSSVSEAWIADHARHVTRMLPGGMFVQGIFVTSDE 485
           Y + K EI   +  +SEA +    R +   +PGG+     +   DE
Sbjct: 82  YVIPKHEIRNRIRLLSEASLISCLRWLLHRIPGGVITWSTYKLFDE 127


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 276 ARENVIHLARTPEEKGSEIGIESNYGLDKSEIAKNLSS 389
           A EN++    TP++   ++G  +++ +DK +  K  SS
Sbjct: 631 APENILLDGLTPKQSSEDVGDATSFHMDKLDKEKEKSS 668


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 192 PEHCLQYLEQYASKEIFAIG--LILGQMTDARENV 290
           P H  +++  YA K+IF +G   +  ++T  ++N+
Sbjct: 161 PVHIQEFIRPYAQKDIFCVGGTSLFWKLTPNKQNL 195


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 457 TNIPPGSILVTCRAWSAIHASDTLLKFFA 371
           T +PPG ILV       I A + L+K ++
Sbjct: 300 TKLPPGDILVFLTGQDEIEALEALIKSYS 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,890,320
Number of Sequences: 5004
Number of extensions: 59049
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)