Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4p10
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0958 + 24814588-24814704,24814957-24815380,24815458-248156...    30   1.5  
08_01_0538 - 4670159-4670251,4670332-4670393,4670476-4670599,467...    29   3.4  
08_02_0583 + 19006495-19006683,19006954-19007060,19007124-190072...    29   4.5  
04_04_0581 + 26365806-26366234                                         29   4.5  
02_03_0408 - 18692176-18692278,18692590-18692669,18692764-186928...    29   4.5  
09_04_0048 - 14188102-14188146,14188656-14188790                       28   6.0  
05_01_0142 - 940421-940701,941262-941574                               28   6.0  
12_02_0142 - 14306325-14306490,14306584-14306687,14306788-143069...    28   7.9  
10_07_0194 - 13957709-13957925,13960065-13960129,13960281-139604...    28   7.9  

>12_02_0958 +
           24814588-24814704,24814957-24815380,24815458-24815669,
           24815853-24816120,24816226-24816416,24816635-24816895
          Length = 490

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = -1

Query: 605 EHGDNTILVWILSSKS*YMVWIYDPT 528
           E GD  ILV+I S  S + VWIYDP+
Sbjct: 94  EKGD--ILVFIYSGNSHFKVWIYDPS 117


>08_01_0538 -
           4670159-4670251,4670332-4670393,4670476-4670599,
           4670797-4670859,4671483-4671533,4671627-4671691,
           4671797-4671935,4672332-4672388,4672729-4672827,
           4673266-4673337,4673426-4673494,4673617-4673762,
           4673881-4674157
          Length = 438

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +2

Query: 254 SHYTCPSCNTAIVTRVER 307
           SHY CPSC TAI  R  R
Sbjct: 15  SHYPCPSCPTAIPIRDRR 32


>08_02_0583 +
           19006495-19006683,19006954-19007060,19007124-19007289,
           19007362-19007458,19008011-19008366
          Length = 304

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 123 YRRIRTRHRTSPNHNQEYILHILPYLLN 206
           YR   TR +   +++ +Y+L++LP L N
Sbjct: 88  YRLSNTREQIQSSYSSDYLLYVLPLLFN 115


>04_04_0581 + 26365806-26366234
          Length = 142

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 452 CSFRCTRCSSGNNAQHFGSYSCSKECKR 369
           C  RC R SS ++  H  S  C  +CK+
Sbjct: 110 CGKRCYRSSSSSSLSHIPSTKCVVKCKK 137


>02_03_0408 -
           18692176-18692278,18692590-18692669,18692764-18692890,
           18694016-18694051,18695832-18696085
          Length = 199

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
 Frame = +2

Query: 251 PSHYTCPSCNTAIVTRVERVST--------TKTHLFAALLCLIGCWPCVCIPYCTNSCQ- 403
           P+ + C +C  A V+ +    T        +K  L + + C++     VC    +  C  
Sbjct: 68  PAPFHCQACGAAAVSSLRSEDTIFFPVHGRSKPSLASVVACMMPFMMGVCFLCPSMDCLW 127

Query: 404 NAEHYCPNCSAYIGNY 451
           +  HYCP+C   +  +
Sbjct: 128 HKYHYCPSCGEKVAEF 143


>09_04_0048 - 14188102-14188146,14188656-14188790
          Length = 59

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +2

Query: 254 SHYTCPSCNTAIVTR 298
           SHY CPSC TAI  R
Sbjct: 15  SHYPCPSCPTAIPKR 29


>05_01_0142 - 940421-940701,941262-941574
          Length = 197

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 104 LSGTHFVPPHQNPPPYVTQPQPG 172
           ++G H  PPHQ  PP    P PG
Sbjct: 23  VAGGHGYPPHQGYPPQGYPPPPG 45


>12_02_0142 -
           14306325-14306490,14306584-14306687,14306788-14306967,
           14307155-14307253,14307346-14307535,14307722-14307748,
           14308190-14308506,14308532-14308675,14308799-14308905,
           14309085-14309357,14309470-14309827
          Length = 654

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = -2

Query: 187 ICRIYSWLWLGDVRWRVLMRRYEVCARQICFIFNIGHFSLVRHKSRTKFPVIR 29
           IC    ++    V+W   + + +   +   F FNI +F    H  +  FP++R
Sbjct: 476 ICNSEKFVSESCVKWVKSINKEQKLPKLDLFSFNISYFFFASHPIKLFFPIVR 528


>10_07_0194 -
           13957709-13957925,13960065-13960129,13960281-13960454,
           13960847-13960889,13961081-13961225,13961305-13961413,
           13961694-13961822,13961935-13962031,13962639-13962703,
           13963275-13963439
          Length = 402

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 3   DSRLWCSYNRITGNLVRDLCLT 68
           +S+ WC   R  G++V DLC T
Sbjct: 335 ESQAWCGLTRSNGDVVADLCGT 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,319,055
Number of Sequences: 37544
Number of extensions: 386880
Number of successful extensions: 1189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)