Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4o22
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 204 7e-54
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 32 0.070
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom... 29 0.49
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 29 0.86
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 28 1.1
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 2.6
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 27 3.5
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 26 4.6
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 26 6.0
SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.0
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 25 8.0
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 25 8.0
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 204 bits (499), Expect = 7e-54
Identities = 99/197 (50%), Positives = 142/197 (72%)
Frame = +2
Query: 113 VLQGGYHHAALRKLQEPNTSIEPHNIMYPVFLVEKDNAIEPVHSMPNVNRYGVDQLIPLL 292
+L GY + LR+ Q I ++MYP+F+ E D+A E + SMPN R+GV++L L
Sbjct: 8 LLHAGYSNPLLREWQGVRP-ITKSSLMYPIFISEIDDAKEAIDSMPNQFRWGVNRLEEFL 66
Query: 293 AELVEKGLKSILIFGIVETLPKDPTGTSADSVDNPVIKALPKLRAAFPDLLIACDVCLCP 472
LV+KGL+S+++FG++E+ KD G+ ADS + PVIKA+ ++R FP+L++ACDVCLC
Sbjct: 67 GPLVKKGLRSVILFGVIES-KKDYCGSMADSENGPVIKAVKEIRHLFPELVVACDVCLCE 125
Query: 473 YTSHGHCGLLKSGGGIDHEASVKRIAEVALAYAKAGAHVVAPSDMMDNRIKAIKEELVRN 652
YT HGHCGLL G I++ SV+RIAEV+ YA AGA +++PSD MD R+KAIK++LV
Sbjct: 126 YTDHGHCGLLYEDGTINNAKSVERIAEVSGNYALAGAQIISPSDCMDGRVKAIKQKLVEL 185
Query: 653 KLQNQVSILSYSCKFAS 703
+L ++V ++SYS KFAS
Sbjct: 186 ELSHKVCVISYSAKFAS 202
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 32.3 bits (70), Expect = 0.070
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Frame = -1
Query: 402 ITGLSTESALVPVGSL--GSVSTIPKMSIDLSPFSTSSAKRGMSWSTPYLFTFGIL*TGS 229
I+ S S V S+ S S+ S+ +S STSS S S+P + I + S
Sbjct: 564 ISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSIS-SSS 622
Query: 228 IALSFSTKNTGYIILCGSMLVFGSCNFLKAA 136
LS T +T +++ S ++ GS + L ++
Sbjct: 623 TILSSPTPSTSSLMISSSSIISGSSSILSSS 653
>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 233
Score = 29.5 bits (63), Expect = 0.49
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 71 ETKIMSNLYLTPEHVLQGGYHHAA-LRKLQEPNTSIEPHNIMYPVFLVEKD-NAIEPVHS 244
+ +I + L H Q H AA +RKL E N++IE + P+F E D + ++ V S
Sbjct: 50 QLRIQKHAKLNYSH--QATQHVAAQIRKLYEQNSAIEDITFLNPLFYGEIDLSNLDSVKS 107
Query: 245 MPN 253
+P+
Sbjct: 108 LPH 110
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 28.7 bits (61), Expect = 0.86
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 267 PYLFTFGIL*TGSIALSFSTKNTGYIILCGSMLVFGSC 154
P F GI + + L+F+T T Y CGS ++ C
Sbjct: 136 PLTFLPGIACSADMILNFTTLMTIYFASCGSYAIYACC 173
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 28.3 bits (60), Expect = 1.1
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Frame = -1
Query: 390 STESALVPVGSLGSVSTIPKMSIDLSPFSTSSAKRGMS----WSTPYLFTFGIL*TG--S 229
S ++ L PV S ++ PK ++ + S + G + W + F F L + +
Sbjct: 919 SQKAPLSPVESKINLMVAPKRVLNCASDSLRALLAGKTDKSFWGSRIPFLFNKLKSKQKA 978
Query: 228 IALSFSTKNTGYIILCGSMLVFGSC 154
++ SF+T+N+ I+ S L FG C
Sbjct: 979 VSSSFNTENSFLILQAVSPLTFGGC 1003
>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 153 YRNRTQASNRTILCILCF 206
Y NR QASN T +C+ C+
Sbjct: 160 YSNRLQASNDTGVCVKCY 177
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -2
Query: 593 PPHEHQLLHKPMRLQLSSLLMLHGRYLLHSSVSHNVRVMCTDINIHH 453
PP H HKP L + + + R +L RV+ D +IHH
Sbjct: 191 PPGHHAEPHKPGGFCLFNNVSVTARSMLQRFPDKIKRVLIVDWDIHH 237
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 449 ACDVCLCPYTSHGHCGLLKSGGGIDHEASVKRIAEVALAYA 571
ACDV +C G CGLL G + S + + ++ + YA
Sbjct: 1105 ACDVDVC-----GQCGLLGYKGWCNSCQSTREVVKMTIPYA 1140
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 530 LHGRYLLHSSVS-HNVRVMCTDINIHHMLLTNQERQHAISAM 408
+ GRY + + HN R D +H + Q HAISAM
Sbjct: 183 IEGRYDQYLELEKHNPRSTIQDPRVHACIFFIQPTGHAISAM 224
>SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 232
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 501 SKPQCPCDVYGHKHTSHAINKSG 433
+KPQCP +H ++AIN +G
Sbjct: 85 TKPQCPKGFLQWQHGTYAINDTG 107
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.4 bits (53), Expect = 8.0
Identities = 18/64 (28%), Positives = 23/64 (35%)
Frame = -1
Query: 486 PCDVYGHKHTSHAINKSGKAARNFGNAFITGLSTESALVPVGSLGSVSTIPKMSIDLSPF 307
PC G K + + N G+ + ESA P S+ S S SPF
Sbjct: 94 PCISTGGKVEEKELKVNKDVDENEGHVAVETGKKESAAKPAASVSPFSQFASFSNASSPF 153
Query: 306 STSS 295
S S
Sbjct: 154 SNVS 157
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 47 NTYSHLIKETKIMSNLYLTPEHVLQGGYHHAALRKLQEPNTSIEPHNI-MYPVFLVEK 217
N+Y L+K K ++ YL E++ A L K + TS ++ + P+ +VEK
Sbjct: 152 NSYWWLVKMCKNLAIGYLPAEYIETPSERLARLNKYKNSETSNSQQSVTLPPLDIVEK 209
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,883
Number of Sequences: 5004
Number of extensions: 65163
Number of successful extensions: 210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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