Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4o22
(705 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1311 - 29241884-29242054,29242802-29242879,29242968-292430... 106 1e-23
04_04_0988 - 29941838-29941889,29942113-29942239,29942345-299423... 33 0.29
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497... 30 2.1
10_08_0680 - 19846481-19846767,19847192-19847379,19847467-198476... 29 4.8
04_04_0196 - 23496899-23496903,23497758-23497994,23498106-23498196 29 4.8
03_05_0456 - 24498212-24499581,24502660-24503071 29 4.8
02_01_0168 + 1162447-1162866,1162940-1163317,1163606-1163829,116... 29 4.8
11_06_0313 + 22306497-22308938 28 6.3
11_02_0103 - 8320207-8320443,8320540-8320593,8321055-8321162,832... 28 6.3
02_05_1234 - 35127322-35128378,35128423-35128467,35130016-351302... 28 6.3
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986... 28 6.3
10_01_0207 - 2219247-2219902,2220203-2221156,2223739-2224897 28 8.3
05_05_0381 + 24531622-24532918,24535334-24535468,24535592-245357... 28 8.3
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 28 8.3
01_07_0041 + 40688242-40688278,40688396-40688502,40688612-406887... 28 8.3
>06_03_1311 -
29241884-29242054,29242802-29242879,29242968-29243049,
29243141-29243212,29243316-29243437,29243541-29243596,
29244264-29244333,29244435-29244518,29244599-29244667,
29244855-29244928,29245014-29245125,29245220-29245510
Length = 426
Score = 106 bits (255), Expect = 1e-23
Identities = 64/181 (35%), Positives = 109/181 (60%), Gaps = 2/181 (1%)
Frame = +2
Query: 167 TSIEPHNIMYPVFLVE-KDNAIEPVHSMPNVNRYGVDQ-LIPLLAELVEKGLKSILIFGI 340
T+I P N++ P+F+ E +D+A P+ +MP R G L+ + + + G+ S ++F
Sbjct: 119 TTISPANLVLPLFIHEGEDDA--PIGAMPGCYRLGWRHGLLDEVYKSRDVGVNSFVLFPK 176
Query: 341 VETLPKDPTGTSADSVDNPVIKALPKLRAAFPDLLIACDVCLCPYTSHGHCGLLKSGGGI 520
V K +G A + + V + + L+ FPD+++ DV L PY+S GH G+++ G I
Sbjct: 177 VPDALKSQSGDEAYNDNGLVPRTIRLLKDKFPDIVVYTDVALDPYSSDGHDGIVREDGVI 236
Query: 521 DHEASVKRIAEVALAYAKAGAHVVAPSDMMDNRIKAIKEELVRNKLQNQVSILSYSCKFA 700
++ +V ++ + A++ A+AGA VV+PSDMMD R+ AI+ L + VSI+SY+ K+A
Sbjct: 237 MNDETVYQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGF-HDVSIMSYTAKYA 295
Query: 701 S 703
S
Sbjct: 296 S 296
>04_04_0988 -
29941838-29941889,29942113-29942239,29942345-29942392,
29943014-29943088,29943178-29943241,29943316-29943469,
29943721-29943924,29944002-29944190,29944283-29944488,
29944666-29944760,29944846-29944968,29945274-29945322,
29945709-29945780
Length = 485
Score = 32.7 bits (71), Expect = 0.29
Identities = 26/112 (23%), Positives = 45/112 (40%)
Frame = -1
Query: 546 ILFTDASWSIPPPLFSKPQCPCDVYGHKHTSHAINKSGKAARNFGNAFITGLSTESALVP 367
+L ++ W P S CP +Y S + S + + N F S+L+
Sbjct: 152 LLLSNILWKTPDRSISHDTCPLTIYVASSISANVRNSLGSGSQYANGFAAADIERSSLIL 211
Query: 366 VGSLGSVSTIPKMSIDLSPFSTSSAKRGMSWSTPYLFTFGIL*TGSIALSFS 211
G + S + K ++ SA+ G+ + +L +FG GS L F+
Sbjct: 212 CGKAFADSAMLKGALSALTAPVLSARGGLPF-PGWLLSFG----GSAVLLFA 258
>07_03_0493 +
18747427-18748356,18748594-18748697,18749586-18749795,
18749992-18750597,18750819-18751095,18751163-18751310,
18751957-18752044,18752167-18752284
Length = 826
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 519 IPPPLFSKPQCPCDVYGHKHTSHAINKSGKAA 424
+PPP +P+CP + H H H G AA
Sbjct: 36 VPPPQSPRPRCPDHQHHHHHHHHHDAAGGAAA 67
>10_08_0680 -
19846481-19846767,19847192-19847379,19847467-19847666,
19847799-19848060,19848652-19848758
Length = 347
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +3
Query: 642 WSEINCKTKCRY-CLTRVSSRR 704
W E NCK++CRY C+ S R
Sbjct: 79 WKEWNCKSECRYHCMMERESER 100
>04_04_0196 - 23496899-23496903,23497758-23497994,23498106-23498196
Length = 110
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = -1
Query: 312 PFSTSSAKRGMSWSTPYLFTFGIL*TGSIALSFSTKNTGYIILCGSMLVFGSCNFLKAA 136
P + + G W+ ++ +G ++L++S G++ G MLVF + L++A
Sbjct: 22 PKHAAIVRSGTEWTAAAHVITAVIGSGVLSLAWSVAQLGWLAGPGMMLVFAAVTALQSA 80
>03_05_0456 - 24498212-24499581,24502660-24503071
Length = 593
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -1
Query: 426 ARNFGNAFITGLSTESALVPVGSLGSVSTIPKMSIDL-SPFSTSSAKRGMSWSTPYLFTF 250
AR+ + ++ +AL ++ +P ID +PFS + A RGM W+ Y+ F
Sbjct: 297 ARDIPVGLVGAMALTTALYCALAVTLCLMVPYGEIDPDAPFSVAFADRGMGWA-KYVVAF 355
Query: 249 GIL 241
G L
Sbjct: 356 GAL 358
>02_01_0168 +
1162447-1162866,1162940-1163317,1163606-1163829,
1163929-1163992,1164521-1164717,1164849-1165062
Length = 498
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +2
Query: 326 LIFGIVETLPKDPTGTSADSVDNPVIKALPKLRAAFPDLLIACDVCLCPYTSHGHCGLLK 505
L+ + ETL KD D+V+ +P ++ A P ++CD+C+ + + LLK
Sbjct: 249 LLLALAETLRKD----DFDNVEAITSARVPIVKIADPGSGLSCDICVNNLFAVANTKLLK 304
Query: 506 SGGGID 523
ID
Sbjct: 305 DYAQID 310
>11_06_0313 + 22306497-22308938
Length = 813
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -1
Query: 513 PPLFSKPQCPCDVYGHKHTSHAINKSGKAARNFGNAFITGLSTESALVPVGSLGS 349
PP+F+ P P D ++ +A++ +G A N G A TG+ + + G++ S
Sbjct: 70 PPMFASPAAPAD--PNQRQPYAVHLNGAAPAN-GTANNTGVIPDLQIAVAGTVES 121
>11_02_0103 -
8320207-8320443,8320540-8320593,8321055-8321162,
8321406-8321551,8321697-8321892,8323312-8323533
Length = 320
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -1
Query: 399 TGLSTESALVPVGSLGSVSTIPKMSIDLSPFSTSSAKRGMSWSTPY 262
+GL + ALV +G +P+ +I L+P S S +RG+ PY
Sbjct: 83 SGLQDQVALVSIGGWSPNQGVPQPAIILNP-SFSRHRRGLCPGRPY 127
>02_05_1234 -
35127322-35128378,35128423-35128467,35130016-35130275,
35130610-35131365,35132115-35132122,35133559-35134327
Length = 964
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +2
Query: 470 PYTSHGH----CGLLKSGGGIDHEASVKRIAEVALAYAKAGAHVVAPSDMMDNR-IKAIK 634
P SH H C L G + E S+K ++ +A H VA D++D++ + A +
Sbjct: 242 PRQSHNHERKECSLSGLQGSQNGEDSMKPVSISDVATTSTNDHTVAHGDIIDDQSMDADE 301
Query: 635 EELVRNKL 658
+++VR L
Sbjct: 302 KKVVRKSL 309
>01_01_1220 +
9862195-9862281,9862427-9862646,9862764-9862916,
9863016-9863674,9863749-9863852,9863950-9864192,
9864262-9864376,9864696-9864909,9864995-9865511,
9866439-9866448,9867363-9867551,9867755-9868084,
9868639-9868872,9869303-9869743
Length = 1171
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -1
Query: 351 SVSTIPKMSIDLSPFSTSSAKRGMSWSTP-YLFTFGIL*TGSIALSFSTKNTGYIILCGS 175
+V P +++ +SP + R W+T Y +F I G+ A + ++K + LCG
Sbjct: 724 AVEAPPGLAVKVSPERLVFSSR---WTTAAYQVSFEIASGGAGAGAGASKGLSHKFLCGG 780
Query: 174 MLVFG 160
L+FG
Sbjct: 781 RLIFG 785
>10_01_0207 - 2219247-2219902,2220203-2221156,2223739-2224897
Length = 922
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 612 TIGLKQSKRSWSEINCKTKCRYCLTR 689
T+ L + +W E N + CRYC+ R
Sbjct: 782 TLTLAVTDGNWPETNFSSDCRYCIMR 807
>05_05_0381 +
24531622-24532918,24535334-24535468,24535592-24535764,
24536029-24536239,24536287-24536554,24536664-24536814,
24536938-24537246
Length = 847
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 11 NFLFKFVKSRN*NTYSHLIKETKIMSNLYL 100
NF F FV S TYS + + IMS L L
Sbjct: 233 NFSFSFVNSAREVTYSFQVPDASIMSRLVL 262
>02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 233 PVHSMPNVNRYGVDQLIPLLAELVEKGLKSILIFGIVET 349
P + P VNR G+ L+P L + L S ++FG T
Sbjct: 918 PSSAPPGVNRIGLLSLLPESRVLEQSSLNSEILFGCAMT 956
>01_07_0041 +
40688242-40688278,40688396-40688502,40688612-40688707,
40688859-40688915,40689033-40689194,40689310-40689394,
40689648-40689738,40689813-40689977,40690121-40690240,
40690330-40690402,40690482-40690650,40690741-40691651,
40691839-40691931,40692065-40692255,40692343-40692455,
40692757-40692783,40693915-40693949
Length = 843
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 210 TKNTGYIILCGSMLVFGSCNFLKAA*WYPPC 118
TK+ + +L ML F C FL + +YP C
Sbjct: 690 TKHMKFFLLVVDMLKFSFCKFLAKSQFYPLC 720
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,955,942
Number of Sequences: 37544
Number of extensions: 408262
Number of successful extensions: 1135
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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