Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4o22
(705 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL022288-5|CAA18366.1| 301|Caenorhabditis elegans Hypothetical ... 36 0.037
AL022288-1|CAA18362.1| 301|Caenorhabditis elegans Hypothetical ... 36 0.037
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 31 0.80
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 31 0.80
L23645-8|AAK26133.1| 282|Caenorhabditis elegans Peroxisome asse... 31 1.1
Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical pr... 28 5.7
U42436-3|AAL02471.1| 498|Caenorhabditis elegans Hypothetical pr... 28 5.7
U42436-2|AAL02470.2| 552|Caenorhabditis elegans Hypothetical pr... 28 5.7
AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein. 28 5.7
AL032630-1|CAA21558.1| 366|Caenorhabditis elegans Hypothetical ... 27 9.9
>AL022288-5|CAA18366.1| 301|Caenorhabditis elegans Hypothetical
protein ZK1025.8 protein.
Length = 301
Score = 35.5 bits (78), Expect = 0.037
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 2/126 (1%)
Frame = +2
Query: 320 SILIFGIVETLPKDPTGTSADSVDNPVIKALPKLRAAFPDLLIACDV--CLCPYTSHGHC 493
S+LI PK G + D P I P A + LIAC++ + T + C
Sbjct: 8 SVLIILYFVLKPKSLKGFNPDGFIKPFISYAPSFFTAPDNKLIACEIRKSMSQLTLNMMC 67
Query: 494 GLLKSGGGIDHEASVKRIAEVALAYAKAGAHVVAPSDMMDNRIKAIKEELVRNKLQNQVS 673
L + + + E + + + V PSD + N A++ VR+ + VS
Sbjct: 68 LLYNETQYLQDKNNFTNTWETSTRKCTSETNFVTPSDSLKNDKDAVRFVFVRDPFRRFVS 127
Query: 674 ILSYSC 691
+ C
Sbjct: 128 MYLNKC 133
>AL022288-1|CAA18362.1| 301|Caenorhabditis elegans Hypothetical
protein ZK1025.2 protein.
Length = 301
Score = 35.5 bits (78), Expect = 0.037
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 2/126 (1%)
Frame = +2
Query: 320 SILIFGIVETLPKDPTGTSADSVDNPVIKALPKLRAAFPDLLIACDV--CLCPYTSHGHC 493
S+LI PK G + D P I P A + LIAC++ + T + C
Sbjct: 8 SVLIILYFVLKPKSLKGFNPDGFIKPFISYAPSFFTAPDNKLIACEIRKSMSQLTLNMMC 67
Query: 494 GLLKSGGGIDHEASVKRIAEVALAYAKAGAHVVAPSDMMDNRIKAIKEELVRNKLQNQVS 673
L + + + E + + + V PSD + N A++ VR+ + VS
Sbjct: 68 LLYNETQYLQDKNNFTNTWETSTRKCTSETNFVTPSDSLKNDKDAVRFVFVRDPFRRFVS 127
Query: 674 ILSYSC 691
+ C
Sbjct: 128 MYLNKC 133
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 31.1 bits (67), Expect = 0.80
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -3
Query: 376 TSTCWVLRQCLHNPKNEYRFESFFHKFC*KGYELVNTISVYIRHTMNRFDSIIF 215
+++ W RQC H+PK+E + F H Y V+ Y +H N F S +F
Sbjct: 1952 SNSSWFCRQCGHSPKSE--IDLFLH------YIQVHLKPAYDKHQSNSFKSNVF 1997
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 31.1 bits (67), Expect = 0.80
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -3
Query: 376 TSTCWVLRQCLHNPKNEYRFESFFHKFC*KGYELVNTISVYIRHTMNRFDSIIF 215
+++ W RQC H+PK+E + F H Y V+ Y +H N F S +F
Sbjct: 1952 SNSSWFCRQCGHSPKSE--IDLFLH------YIQVHLKPAYDKHQSNSFKSNVF 1997
>L23645-8|AAK26133.1| 282|Caenorhabditis elegans Peroxisome
assembly factor protein19 protein.
Length = 282
Score = 30.7 bits (66), Expect = 1.1
Identities = 40/149 (26%), Positives = 58/149 (38%), Gaps = 6/149 (4%)
Frame = +2
Query: 137 AALRKLQEPNTSIEPHNIMYPVFLVEKDNAIEPVHSM-PNVNRYGVDQLIPLLAELVEKG 313
A L L+ PN+ +EP M L K+ P+ + N +Y D L AE E+
Sbjct: 128 AGLDMLRSPNSPMEPFMSMIMQTLASKEVMYPPLKEIFDNYPKYLEDNGAGLDAETKERY 187
Query: 314 LKSILIFG-IVETLPKDPTGTSADSVD---NPVIKALPKLRAAFPDL-LIACDVCLCPYT 478
K + G I K P VD P +A P F L + ++ Y
Sbjct: 188 EKQFEVLGKICTEFEKQPELAEVQPVDAATQPAPEADPASIEHFEKLGKLLVELQQYGYP 247
Query: 479 SHGHCGLLKSGGGIDHEASVKRIAEVALA 565
G L G ID E+ + ++A+ A A
Sbjct: 248 PKELVGALPDGWQID-ESGLPKVADAAAA 275
>Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical
protein T01H3.1 protein.
Length = 214
Score = 28.3 bits (60), Expect = 5.7
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = -1
Query: 345 STIPKMSIDLS-PFSTSSAKRGMSWSTPYLFTFG--IL*TGSIALSFSTKNTGYIILCGS 175
ST P M L FS S + G W +FT G IL G A TKN II C +
Sbjct: 45 STSPHMWAGLGIGFSLSLSVLGAGWG---IFTTGSSILGGGVKAPRIRTKNLVSIIFCEA 101
Query: 174 MLVFG 160
+ +FG
Sbjct: 102 VAIFG 106
>U42436-3|AAL02471.1| 498|Caenorhabditis elegans Hypothetical
protein C49H3.6b protein.
Length = 498
Score = 28.3 bits (60), Expect = 5.7
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Frame = -1
Query: 546 ILFTDASWSIPPPLFSKPQCPCD----VYGHKHTSHAINKSGKAARNFGNAFITG-LSTE 382
+ T A SI P PQ P D + ++ A+N+ A + TE
Sbjct: 315 LTLTGAKMSIDKPGNVLPQLPPDTGSLIMANRGAKPAVNRQQPAPPPVARLPNSATFPTE 374
Query: 381 SALVPVGSLGSVST-IPKMSIDLSPFSTSSAKRGMS 277
+ +P +V+T +P+MSI P S+S+ R MS
Sbjct: 375 KSRLPRAPPPAVTTPVPRMSIGSLPASSSNVPRTMS 410
>U42436-2|AAL02470.2| 552|Caenorhabditis elegans Hypothetical
protein C49H3.6a protein.
Length = 552
Score = 28.3 bits (60), Expect = 5.7
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Frame = -1
Query: 546 ILFTDASWSIPPPLFSKPQCPCD----VYGHKHTSHAINKSGKAARNFGNAFITG-LSTE 382
+ T A SI P PQ P D + ++ A+N+ A + TE
Sbjct: 315 LTLTGAKMSIDKPGNVLPQLPPDTGSLIMANRGAKPAVNRQQPAPPPVARLPNSATFPTE 374
Query: 381 SALVPVGSLGSVST-IPKMSIDLSPFSTSSAKRGMS 277
+ +P +V+T +P+MSI P S+S+ R MS
Sbjct: 375 KSRLPRAPPPAVTTPVPRMSIGSLPASSSNVPRTMS 410
>AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein.
Length = 214
Score = 28.3 bits (60), Expect = 5.7
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = -1
Query: 345 STIPKMSIDLS-PFSTSSAKRGMSWSTPYLFTFG--IL*TGSIALSFSTKNTGYIILCGS 175
ST P M L FS S + G W +FT G IL G A TKN II C +
Sbjct: 45 STSPHMWAGLGIGFSLSLSVLGAGWG---IFTTGSSILGGGVKAPRIRTKNLVSIIFCEA 101
Query: 174 MLVFG 160
+ +FG
Sbjct: 102 VAIFG 106
>AL032630-1|CAA21558.1| 366|Caenorhabditis elegans Hypothetical
protein Y62H9A.1 protein.
Length = 366
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -1
Query: 408 AFITGLSTESALVPVGSLGSVSTIPKMSIDLSPFSTSSAKRGMSWSTPYLFTFGIL 241
AFI G+S ++P+ + S +T+ K+ +S + K ++ S YL FG+L
Sbjct: 212 AFI-GISIVVIIIPLITFKSYTTLSKIHKMISKQTLIQLKNALAISLWYLLQFGVL 266
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,758,449
Number of Sequences: 27780
Number of extensions: 371126
Number of successful extensions: 936
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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