Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4o18
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    40   5e-04
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    29   0.53 
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    29   0.92 
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc...    28   1.2  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    28   1.2  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   6.5  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   6.5  

>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
 Frame = +1

Query: 457 IKGRRMHMEDRF--IIN---ENVNNTGISLFAIFDGHGGEFAANYAKDHL 591
           ++G R+ MED    ++N    N +N   S F +FDGHGG+  A Y + HL
Sbjct: 29  MQGWRISMEDAHCALLNFTDSNSSNPPTSFFGVFDGHGGDRVAKYCRQHL 78


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = +1

Query: 454 AIKGRRMHMEDRF--IINENVN--NTGISLFAIFDGHGGEFAANYAKDHLIQNL 603
           +++G R+ MED    I++   +     +  FA++DGHGG+  A +   +L Q L
Sbjct: 28  SMQGWRISMEDAHSAILSMECSAVKDPVDFFAVYDGHGGDKVAKWCGSNLPQIL 81


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = +1

Query: 493 IINENVNNTGISLFAIFDGHGGEFAANYAKDHLIQNLYNKIVELNA 630
           +I+ N++      + IFDGH G   + + + HL+  +  ++ +  A
Sbjct: 104 VIDRNIDEGNWYFWGIFDGHSGWNTSLFLRQHLVPAVVRELQKCTA 149


>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 347

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 469 RMHMEDRFI-INENVNNTGISLFAIFDGHGGEFAANYAKDHLIQNLYNKI 615
           R  MED  I + +   N      A++DGH G  A++Y + +L + L  K+
Sbjct: 83  RRSMEDTHICLYDFGGNQDDGFVAVYDGHAGIQASDYCQKNLHKVLLEKV 132


>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1150

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 1/159 (0%)
 Frame = +1

Query: 202  DAPVSYLWKMVRLYFLRSEVVVITLAIVIFLMYLQSIELWSRTMLSRLSQAMNPMSAVQR 381
            DAP+ YL  +  L  L       T  + + +++    + +S   L  +S         + 
Sbjct: 762  DAPIRYLSDLSNLELL------FTKHVAVLILHPLVRDYYSLDELMEMSDLRKGGFWEKF 815

Query: 382  MKLMEGSDADKQSWELKGTLSAAYAIKGRRMHMEDRFIINENVNNTGISLFAIFDGHGGE 561
             K  +G DA+K++ + KGT      I   R +        ++   TG+ +  I    G  
Sbjct: 816  GKAFKGKDAEKKNVKKKGTFGVPLEILVERNNA-------QSTVGTGVGVKHIPAFIGNT 868

Query: 562  FAANYAKDHLIQNLYNKIVELNAFKE-GKISDISREIIE 675
             AA   KD  +  ++ K   +   KE   + D+S + I+
Sbjct: 869  LAAMKRKDMSVVGVFRKNGNIRRLKELSDMLDVSPDSID 907


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/54 (22%), Positives = 29/54 (53%)
 Frame = +1

Query: 307  SIELWSRTMLSRLSQAMNPMSAVQRMKLMEGSDADKQSWELKGTLSAAYAIKGR 468
            +++L     L  L  + N ++ + + K+++  D  KQSWE   + ++ + I+ +
Sbjct: 1620 TLQLLMLNCLWELFHSDNMLTNIPKRKMVKLLDILKQSWEFAESFNSDFEIRAK 1673


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 279 YCDLLNVSSKYRIMESNNAKQTVASDESY 365
           Y +LLN S +YR +   NA + +  D  +
Sbjct: 450 YAELLNFSEQYRRLSIKNATKNLTKDNFF 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,639
Number of Sequences: 5004
Number of extensions: 55179
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)