Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4o16
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...   250   2e-67
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   4.5  
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos...    26   4.5  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   5.9  

>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score =  250 bits (611), Expect = 2e-67
 Identities = 118/179 (65%), Positives = 138/179 (77%), Gaps = 1/179 (0%)
 Frame = +2

Query: 161 YKIADEKLAEWGRKEIMLXXKEXPGLMACXRKYAPAKILKGAXIAGSLHMTVXTAVLIET 340
           YK+AD  LA +GRKE+ +   E PGL+A   KYA ++ LKGA IAG LHMT+ TAVLIET
Sbjct: 6   YKVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTIQTAVLIET 65

Query: 341 LXXLGAEVQWSSSNXYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTL-IFPDGKP 517
           L  LGAEV WSS N YSTQD AAAA+ A G+P++AWKGET++EY+WCIEQ L  FP GKP
Sbjct: 66  LVALGAEVTWSSCNIYSTQDHAAAAIAATGVPVFAWKGETEEEYLWCIEQQLKSFPSGKP 125

Query: 518 LXMILDDGGDLTNLVHTKYPDLLKDVXGIXXXXXXGVHNLYKMFREGLLKVPAINVNDS 694
           L MILDDGGDLT LVH ++P+LL D+ GI      GVHNLYKMF+E  LKVPAINVNDS
Sbjct: 126 LNMILDDGGDLTALVHERHPELLVDIRGISEETTTGVHNLYKMFKENKLKVPAINVNDS 184


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 588 FKRSGYLVWTKFVKSPPSSKIIXRGF 511
           F++ G L + K VK P + + + RGF
Sbjct: 297 FRQFGPLAYAKLVKDPATDRSLGRGF 322


>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 196

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 264 GAYFRXHAIRPGXSFXXNIISFRPHSANFSS 172
           G+  R  A++PG +   +I  +RP   NF+S
Sbjct: 27  GSVRRERAVKPGYTAPEDIKRYRPGRGNFAS 57


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/51 (19%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -1

Query: 512 FHQGRSMFVQYTKYTRHQFL-PSRHRWVFLRQPXQLRPRLVYYKXYCWTIV 363
           F + + +F ++  +  + F+ P    + ++ +   LR R VY++   W ++
Sbjct: 417 FEKRKQIFAEFIYWLYNSFIIPILQSFFYITESSDLRNRTVYFRKDIWKLL 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,746
Number of Sequences: 5004
Number of extensions: 45771
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)