Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4o16
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888     88   5e-18
11_06_0445 - 23679918-23680282,23680415-23683349                       28   6.2  
06_03_1499 + 30593336-30593750,30594352-30595343                       28   6.2  
02_05_0555 - 29937973-29938395,29938509-29938790                       28   6.2  
02_05_0556 - 29940146-29940158,29941060-29941240,29941271-29941670     28   8.1  

>11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888
          Length = 433

 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 47/113 (41%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
 Frame = +2

Query: 230 PGLMACXRKYAPAKILKGAXIAGSLHMTVXTAVLIETLXXLGAEVQW-SSSNXYSTQDEA 406
           PGLMAC  ++ P++  KGA I+GSLH T+  AVLIETL  LG         +        
Sbjct: 2   PGLMACRAEFGPSQPFKGARISGSLHRTIQAAVLIETLTALGRRGPLVLLQHLLHAGPRR 61

Query: 407 AAALVAVGIPIYAWKGETDDEYIWCIEQTLIFPDGKPLXMILDDGGDLTNLVH 565
                     ++AWKGET +EY WC E+ L +  G    +I+DDGGD T L+H
Sbjct: 62  RPPSPRDSAAVFAWKGETLEEYWWCTERCLDWGVGAGPDLIVDDGGDATLLIH 114



 Score = 36.7 bits (81), Expect = 0.018
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +2

Query: 566 TKYPDLLKDVXGIXXXXXXGVHNLYKMFREGLLKVPAINVNDS 694
           +KY  + + + G+      GV  LY+M   G L  PAINVNDS
Sbjct: 156 SKYRKMKERLVGVSEETTTGVKRLYQMQETGALLFPAINVNDS 198


>11_06_0445 - 23679918-23680282,23680415-23683349
          Length = 1099

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 512  KPLXMILDDGGDLTNLVHTKYPDLLKDV 595
            +P   I  DG DL N V + +PD + D+
Sbjct: 1007 QPTDEIFQDGMDLHNFVESAFPDQISDI 1034


>06_03_1499 + 30593336-30593750,30594352-30595343
          Length = 468

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/70 (24%), Positives = 28/70 (40%)
 Frame = +2

Query: 257 YAPAKILKGAXIAGSLHMTVXTAVLIETLXXLGAEVQWSSSNXYSTQDEAAAALVAVGIP 436
           Y     L    +  +LH  V   +         A   W+ +   +  D   AALV  G+ 
Sbjct: 316 YRVIDYLNRGDVQAALHANVSGGIPYSWAPCSDALTNWTDAPPSTLPD--IAALVRAGLR 373

Query: 437 IYAWKGETDD 466
           ++ + G+TDD
Sbjct: 374 VWVFSGDTDD 383


>02_05_0555 - 29937973-29938395,29938509-29938790
          Length = 234

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 348 NWEQRYNGPAVTFIVHKTRPQLXWLP*EYPSMPGREKLMTSIF 476
           +WE   +GPA T       P   W P +YP  P +    T ++
Sbjct: 54  HWEVVIDGPAATPYAGGVFPVDVWFPYDYPFRPPKLFFKTKVY 96


>02_05_0556 - 29940146-29940158,29941060-29941240,29941271-29941670
          Length = 197

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +3

Query: 348 NWEQRYNGPAVTFIVHKTRPQLXWLP*EYPSMPGREKLMTSI 473
           +WE   +GP  T     T P   W P EYP  P +    T +
Sbjct: 67  HWEVIIDGPPGTPYAGGTFPVDVWYPNEYPFQPPKLTFKTKV 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,113,301
Number of Sequences: 37544
Number of extensions: 291510
Number of successful extensions: 479
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)