Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4o13
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73103-4|CAA97426.1|  585|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z99281-53|CAB16519.2|  677|Caenorhabditis elegans Hypothetical p...    29   3.4  
AF016427-3|AAB65356.1|  730|Caenorhabditis elegans Yeast mcm (li...    29   3.4  
Z81037-3|CAB02750.1|  205|Caenorhabditis elegans Hypothetical pr...    28   5.9  
L25599-1|AAA28053.1|  343|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>Z73103-4|CAA97426.1|  585|Caenorhabditis elegans Hypothetical
           protein C08F8.5 protein.
          Length = 585

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 450 LSVCTSTTGEAEVRSLNIGSVAICLRFF 367
           LS+C +   +  VRSLN+  + +CL FF
Sbjct: 282 LSLCATKNTKDLVRSLNLKCIRLCLEFF 309


>Z99281-53|CAB16519.2|  677|Caenorhabditis elegans Hypothetical
           protein Y57G11C.18 protein.
          Length = 677

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +2

Query: 32  SNLKPSSVAIIREVYDSENAHLKFEMELERALEAGVSVIVIEPE 163
           ++LKP     I+E  + E+ H+++E   E  +E  V+ + +EP+
Sbjct: 465 NHLKPRKNVYIKEEPEDEDYHMEYEKIPEINMEQNVNELFMEPQ 508


>AF016427-3|AAB65356.1|  730|Caenorhabditis elegans Yeast mcm
           (licensing factor) relatedprotein 7 protein.
          Length = 730

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/51 (25%), Positives = 30/51 (58%)
 Frame = +2

Query: 47  SSVAIIREVYDSENAHLKFEMELERALEAGVSVIVIEPEPLGEETARWIYV 199
           ++ A++RE+Y ++NA +     ++R    G+S + ++ + L + TA  + V
Sbjct: 670 AAFAVLRELYHADNAPIAISNAIQRCARKGISEVALK-KCLDQYTANGLLV 719


>Z81037-3|CAB02750.1|  205|Caenorhabditis elegans Hypothetical
           protein C17E4.5 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +2

Query: 2   IDKMAGDETDSNLKPSSVAIIREVYDSENA---HLKFEMELERALEAGVSVIVIEPEPLG 172
           I+ M GD+ D +     +  I E      A    +   M L  + ++  S  ++ PE   
Sbjct: 14  IEDMTGDDADLSAIEGDLNEIEEEQKKLKAIQNEMVGHMNLNTSSQSNSSQSLLTPEEKA 73

Query: 173 EETARWIYVGNL 208
           E  A+ +YVGN+
Sbjct: 74  EADAKSVYVGNV 85


>L25599-1|AAA28053.1|  343|Caenorhabditis elegans Hypothetical
           protein F54H12.4 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 32  SNLKPSSVAIIREVYDSENAHLKFEMELERALEAGVSVIVIEPE 163
           ++LKP     I+E  + E+ H+++E   E  +E  V+ +  EP+
Sbjct: 131 NHLKPRKNVYIKEEPEDEDYHMEYEKIPEINMEQNVNELFTEPQ 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,825,973
Number of Sequences: 27780
Number of extensions: 330161
Number of successful extensions: 753
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)