Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4o09
         (173 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    27   0.25 
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    23   5.4  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    23   7.1  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    23   7.1  
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    23   7.1  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    22   9.4  
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    22   9.4  

>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 27.5 bits (58), Expect = 0.25
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 65  EMANRGT--KLCFDIVRTYSTAKMPPTDF 145
           E+ANR    KLC+ I++    A +PPT+F
Sbjct: 355 EIANRPRDFKLCYWILKEIGVATIPPTEF 383


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 54   RNTSKWLIEEQNYASTSSE 110
            R+ ++WLI  +NYA + +E
Sbjct: 2720 RDLTRWLISFKNYAESYAE 2738


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 10  SRGSSSVTYCNRLNRETHRNG 72
           S+   S+ +CNRL R    NG
Sbjct: 62  SKQKESLLHCNRLRRIQDENG 82


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 66  KWLIEEQNYASTSSERTARPKCRRRIS 146
           K  + + N A     R  RPK +RRI+
Sbjct: 525 KLKLSQSNKAGPVKHRKRRPKSKRRIT 551


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 36  LQSPQQRNTSKWLIEEQNYASTSSE 110
           ++   +RN  KWL +E     T+SE
Sbjct: 15  IEKKSKRNKRKWLNDENKTHVTASE 39


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 68  FRCVSLLRRLQYVTLELPLLV 6
           F C+SL   LQ+    LP++V
Sbjct: 517 FACLSLFNLLQFPLTMLPIVV 537


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 45  PQQRNTSKWLIEEQNYASTSS 107
           P  +NTS+W+I +     T S
Sbjct: 10  PGSQNTSQWIISKDQLVFTPS 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 714,749
Number of Sequences: 5004
Number of extensions: 10160
Number of successful extensions: 30
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 38
effective length of database: 2,172,326
effective search space used: 41274194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)