Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4o09
         (173 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0177 + 11500330-11500755,11500937-11501383,11501651-11501764     26   4.9  
05_05_0202 - 23211342-23211385,23211493-23211579,23211666-232117...    26   4.9  
04_01_0631 + 8381361-8381560,8381918-8382020,8382604-8383497           25   6.5  
01_01_0384 - 2970369-2970726,2970812-2970882,2971428-2971509,297...    25   6.5  
11_04_0226 + 15092313-15092873                                         25   8.6  

>10_06_0177 + 11500330-11500755,11500937-11501383,11501651-11501764
          Length = 328

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 54  RNTSKWLIEEQNYASTSSERTARPKCRRRISCPXRTR 164
           +   +W +++  +AS+SS+  ARP  +   +   R R
Sbjct: 58  QGVDEWEVDQDQHASSSSKVAARPPVKAAAAAGKRKR 94


>05_05_0202 -
           23211342-23211385,23211493-23211579,23211666-23211779,
           23211886-23212111,23212222-23212401,23212511-23212654,
           23212818-23212979,23213093-23213296,23214109-23214156,
           23214601-23214846
          Length = 484

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 125 KMPPTDFVPXPYTVP 169
           KMPP D+ P PY  P
Sbjct: 44  KMPPFDYTPPPYDGP 58


>04_01_0631 + 8381361-8381560,8381918-8382020,8382604-8383497
          Length = 398

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 54  SVEAIAICHTRTA 16
           +VEA+A+CHT TA
Sbjct: 350 AVEAVAVCHTDTA 362


>01_01_0384 -
           2970369-2970726,2970812-2970882,2971428-2971509,
           2971757-2971818,2972308-2972401,2972502-2972569,
           2972681-2972747,2972830-2972960,2973093-2973200,
           2973577-2973642,2973706-2973774,2973990-2974115,
           2974167-2974284,2974741-2974847,2975889-2976009,
           2976162-2976235,2976955-2977051,2977564-2977679,
           2978218-2978313,2978426-2978635,2979101-2979253
          Length = 797

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 41  IASTEKHIEMANRGTKLCFDIVRTY 115
           +A+T+KHI +     KLC ++V T+
Sbjct: 350 LATTQKHIMLVASVVKLCGELVVTF 374


>11_04_0226 + 15092313-15092873
          Length = 186

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 45  PQQRNTSKWLIEEQNYASTSSERTAR 122
           P  RN   W +  Q Y +T    TAR
Sbjct: 93  PGMRNVVTWTVAVQGYMATGDMETAR 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,890,514
Number of Sequences: 37544
Number of extensions: 73914
Number of successful extensions: 214
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 14,793,348
effective HSP length: 37
effective length of database: 13,404,220
effective search space used: 268084400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)