Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4o09
         (173 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   0.26 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   1.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   1.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   1.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    19   4.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    19   5.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    19   5.5  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    19   5.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    18   9.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    18   9.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    18   9.6  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 0.26
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 57  NTSKWLIEEQNYASTSSERTARP 125
           +T +WL+ E+    TSS  +  P
Sbjct: 72  STGEWLLTEEKLPKTSSNASVEP 94


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 28  VTYCNRLNRETHRNG 72
           VT C   N ET+R G
Sbjct: 562 VTKCKATNEETYRGG 576


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 28  VTYCNRLNRETHRNG 72
           VT C   N ET+R G
Sbjct: 562 VTKCKATNEETYRGG 576


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 28  VTYCNRLNRETHRNG 72
           VT C   N ET+R G
Sbjct: 562 VTKCKATNEETYRGG 576


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 6/14 (42%), Positives = 13/14 (92%)
 Frame = -1

Query: 56  SLLRRLQYVTLELP 15
           +LLR++Q +++E+P
Sbjct: 334 ALLRKMQEMSIEVP 347


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +3

Query: 27  CDILQSPQQRNTSKWLIEEQNYAST 101
           C +  SP Q+     L +E+  ++T
Sbjct: 349 CSVTNSPHQKKLRFHLAKERKASTT 373


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +1

Query: 79  RNKIMLRHRQNVQHGQNAADGFRA 150
           RN    +H+Q+   G +   G+R+
Sbjct: 89  RNATYYQHQQDHGSGMDGMGGYRS 112


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +3

Query: 123 PKCRRRISC 149
           P CRR  SC
Sbjct: 9   PYCRRNFSC 17


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -1

Query: 155 VWARNPSAAFWPCCTF 108
           VW R  +  F   C+F
Sbjct: 193 VWGRYTTEGFLTTCSF 208


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 4/6 (66%), Positives = 6/6 (100%)
 Frame = -1

Query: 128 FWPCCT 111
           ++PCCT
Sbjct: 228 YYPCCT 233


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -1

Query: 155 VWARNPSAAFWPCCTF 108
           VW R  +  F   C+F
Sbjct: 193 VWGRYTTEGFLTTCSF 208


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,148
Number of Sequences: 438
Number of extensions: 734
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 37
effective length of database: 130,137
effective search space used:  2602740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)