Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4o08
(307 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S... 29 0.20
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 29 0.20
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch... 28 0.36
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 27 0.82
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 25 1.9
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 1.9
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 2.5
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 3.3
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 3.3
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 24 4.4
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 24 4.4
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 24 4.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 24 5.8
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 23 7.7
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 23 7.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 23 7.7
SPAC513.03 |mfm2||M-factor precursor Mfm2|Schizosaccharomyces po... 23 7.7
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 23 7.7
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 23 7.7
>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 28.7 bits (61), Expect = 0.20
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -1
Query: 307 GRGSGAXSPAGHPSGRCRAVSRDIRTTTEARRPGTARNTRRPK 179
G+ GA G V+R +RT+T RRP T R+PK
Sbjct: 4 GKAKGAQKTV--QKGIHNKVARKVRTSTTFRRPKTLELARKPK 44
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 0.20
Identities = 21/69 (30%), Positives = 28/69 (40%)
Frame = +2
Query: 89 TPSRPNRSRRFIPVTGRL*ALPAASAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAPPG 268
TPS P S +P + A+P + T S P + G P V A G+ PG
Sbjct: 430 TPSLPVPSIPAVPGMEAM-AMPPGVTSSIAVPTTSSMPLQGMPTMFGAPGVSAPGTEAPG 488
Query: 269 GVTGGAASP 295
T G +P
Sbjct: 489 TGTPGLTTP 497
>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 27.9 bits (59), Expect = 0.36
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 250 VSRDIRTTTEARRPGTARNTRRPK 179
V++ +RT+T RRP T + +R+PK
Sbjct: 21 VAKKVRTSTTFRRPKTLQLSRKPK 44
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 26.6 bits (56), Expect = 0.82
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = -2
Query: 297 AGLAAPPVTPPGGA-----EP*AGTSGPPQRPGAQAQRETLGVRSRQS*ALAAGSAQR 139
A L +PP TP A +P +G + PGA+ Q T R + +++GSA +
Sbjct: 423 ASLPSPP-TPHASASKLAAKPSVKPAGAYRPPGARGQNSTFSYRREEIDVMSSGSANK 479
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.4 bits (53), Expect = 1.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 236 QDHHRGPAPRHSEKHSASEADRAERLLPGALRD 138
++HH+GP +H+E+ + E L+ A D
Sbjct: 416 KEHHQGPKEKHNERPEQNMQSSHELLVIEAFAD 448
>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 1.9
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 164 AQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAPPGGVTGGAASPA 298
+++ L TP V G C G V + G G GG ASP+
Sbjct: 138 SRVLNLNTPIVIDVT-VVGACTGESVCSQGQGMVAGSIGGEASPS 181
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.0 bits (52), Expect = 2.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 223 EARRPGTARNTRRPKPTELSACCRERSETPRHRN 122
EA PG RNTR+ ++S ++ET +N
Sbjct: 475 EADYPGVNRNTRQDDVQDISMETESQNETDESQN 508
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 24.6 bits (51), Expect = 3.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -1
Query: 148 RSETPRHRNKPSRPVWSRRSPHH 80
R + R N P P W+ R+ HH
Sbjct: 885 REQYERSLNLPMGPEWTTRASHH 907
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 24.6 bits (51), Expect = 3.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 214 RPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRS 89
RP + + TE+SA SE R++ K SR +SR S
Sbjct: 174 RPANSTSVPNAVNTEISAARATESEASRNQTKASRD-YSRAS 214
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 24.2 bits (50), Expect = 4.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -1
Query: 208 GTARNTRRPKPTELSACCRERSETPRHRNKPSRPV 104
GTA + R P SA + +S TP N + PV
Sbjct: 188 GTALSQRETLPNMGSAQMKSQSRTPSFSNVTTSPV 222
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 24.2 bits (50), Expect = 4.4
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 288 AAPPVTPPGGAEP*AGTSGPP 226
A PP PP GA +G G P
Sbjct: 1903 ALPPAGPPAGATAISGNPGMP 1923
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 24.2 bits (50), Expect = 4.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 191 SVSRCAWAPGLCGGPDVPAHGSAPPGGVTGGAAS 292
+V RC LC GP VP G VT ++S
Sbjct: 218 TVYRCGPLIDLCTGPHVPHTGRIKSFAVTKNSSS 251
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 23.8 bits (49), Expect = 5.8
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 282 PPVTPPGGAEP*AGTSGPPQRPGAQAQRE 196
PP PP G EP PP PG +R+
Sbjct: 10 PPPPPPPGFEP-PSQPPPPPPPGYVKKRK 37
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 23.4 bits (48), Expect = 7.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 251 GSAPPGGVTGGAASPATPA 307
G A G GGAASP PA
Sbjct: 286 GDAGLGAGLGGAASPPAPA 304
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 23.4 bits (48), Expect = 7.7
Identities = 10/41 (24%), Positives = 17/41 (41%)
Frame = -1
Query: 232 TTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSR 110
TTT+ P T P P S ++ + P + P++
Sbjct: 145 TTTKPAAPAAQSKTETPAPKVTSESTKKETAAPPPQETPTK 185
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 23.4 bits (48), Expect = 7.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 291 LAAPPVTPPGGAEP 250
+AAPPV P GA P
Sbjct: 1147 VAAPPVPAPSGAPP 1160
>SPAC513.03 |mfm2||M-factor precursor Mfm2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 44
Score = 23.4 bits (48), Expect = 7.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 49 SSSISKYYNGNGVDSVETKQVE 114
SSSI YN N D V+T+ ++
Sbjct: 10 SSSIVNAYNNNPTDVVKTQNIK 31
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 23.4 bits (48), Expect = 7.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 228 PQRPGAQAQRETLGVRSRQS*ALAAGSAQRRP 133
P +P + +TLG +R S A AGS P
Sbjct: 296 PYKPYLNSSHDTLGSSTRPSSADTAGSPATSP 327
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 23.4 bits (48), Expect = 7.7
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -1
Query: 280 AGHPSGRCRAVSRDIRTTTEARRPGTARNTRRPKP 176
+GH R + + + T +E + A N+ RP P
Sbjct: 1322 SGHIPNSIRKLEKGLSTLSELKERLNASNSDRPSP 1356
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,246,250
Number of Sequences: 5004
Number of extensions: 22820
Number of successful extensions: 115
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -