Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4o06
(474 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 186 2e-48
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 186 2e-48
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 29 0.36
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 0.48
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 27 1.5
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce... 27 1.9
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 26 2.5
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 26 2.5
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 7.8
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 186 bits (453), Expect = 2e-48
Identities = 83/144 (57%), Positives = 109/144 (75%)
Frame = +2
Query: 38 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 217
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60
Query: 218 ARVRKXTEARXKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 397
R+RK A+ GRH G+GKR+GTA ARMP +W + KID+HLY
Sbjct: 61 FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLY 120
Query: 398 HSLYMKAKGNVFKNKRVLMEYIHR 469
H+LY++AKGN FK+KR L+E+I R
Sbjct: 121 HTLYLEAKGNTFKHKRALIEHIQR 144
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 186 bits (453), Expect = 2e-48
Identities = 83/144 (57%), Positives = 109/144 (75%)
Frame = +2
Query: 38 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 217
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60
Query: 218 ARVRKXTEARXKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 397
R+RK A+ GRH G+GKR+GTA ARMP +W + KID+HLY
Sbjct: 61 FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLY 120
Query: 398 HSLYMKAKGNVFKNKRVLMEYIHR 469
H+LY++AKGN FK+KR L+E+I R
Sbjct: 121 HTLYLEAKGNTFKHKRALIEHIQR 144
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 29.1 bits (62), Expect = 0.36
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -3
Query: 181 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 92
+I +H++DV G+ V LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 28.7 bits (61), Expect = 0.48
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 160 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 65
+VLS + ++D + PHLL +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 27.1 bits (57), Expect = 1.5
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 8 LVCVGSH-RVRMSSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 166
+V VG + ++ S + + K L S MRCG+K W++ + + NT+ + K
Sbjct: 305 IVLVGKYTHLQDSYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360
>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 26.6 bits (56), Expect = 1.9
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -1
Query: 240 SVXLRTRAREWTATGFLMTRPSLIILRMFC 151
S T REWT L T +++R FC
Sbjct: 85 STFWETMGREWTGIDILRTDKFYLLMRRFC 114
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +2
Query: 20 GSHRVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEI 133
G +++ K K L +S+ W D NE+NE+
Sbjct: 9 GDKKIQKKKKKNTKSLQSSLESAENDPFWTDANELNEL 46
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 2.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 317 VPSVAYAHWQYLFSYQS 267
+PSV YA WQ L Y S
Sbjct: 255 IPSVCYAAWQLLAKYDS 271
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 152 QNIRKMIKDGLVIKKPVAVHSRARVRKXTEARXKGRHCG 268
+++R +KD + +PV+V S A + T G G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,291
Number of Sequences: 5004
Number of extensions: 41906
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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