Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4o06
         (474 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   198   2e-51
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical p...    27   5.2  
Z81508-5|CAB04138.1|  357|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z29443-11|CAK55173.1|  367|Caenorhabditis elegans Hypothetical p...    27   9.1  
U52002-7|AAB37730.3|  715|Caenorhabditis elegans Heparan sulphot...    27   9.1  
L29440-1|AAA98752.1|  570|Caenorhabditis elegans endoprotease pr...    27   9.1  
AF039719-1|AAB96754.1|  942|Caenorhabditis elegans Blistered cut...    27   9.1  
AB038044-1|BAB62394.1|  852|Caenorhabditis elegans N-deacetylase...    27   9.1  
AB037943-1|BAB61758.1|  696|Caenorhabditis elegans N-deacetylase...    27   9.1  
AB037942-1|BAB61757.1|  814|Caenorhabditis elegans N-deacetylase...    27   9.1  
AB037941-1|BAB61756.1|  826|Caenorhabditis elegans N-deactylase/...    27   9.1  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  198 bits (482), Expect = 2e-51
 Identities = 87/145 (60%), Positives = 113/145 (77%)
 Frame = +2

Query: 38  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 217
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 218 ARVRKXTEARXKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 397
            R R+  EAR KGRH G+GKRRGTANARMP+K LW                AKK+D+HLY
Sbjct: 61  FRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLY 120

Query: 398 HSLYMKAKGNVFKNKRVLMEYIHRK 472
           H LY++AKGN FKNK+ L+EYI +K
Sbjct: 121 HELYLRAKGNNFKNKKNLIEYIFKK 145


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 146 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKXTEARXKGR 259
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.14 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -2

Query: 374 WQFCTSGAIFLEPFVFVPIVPSVAYAHWQYLFSYQSHSD-DPXYVPLXFCGHGR 216
           W +C   A+FL    F+P     A  +  Y F Y S  D D   + L F  + R
Sbjct: 126 WLYCLGLAMFLLILFFIPFFGGCADNYSFYDFDYTSECDPDDHPITLMFDEYAR 179


>Z81508-5|CAB04138.1|  357|Caenorhabditis elegans Hypothetical
           protein F20E11.7 protein.
          Length = 357

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 62  RLAASVMRCGKKKVWLDPNEI 124
           ++A + + CG  K+W DPN I
Sbjct: 171 QIAETSVTCGDDKIWQDPNGI 191


>Z29443-11|CAK55173.1|  367|Caenorhabditis elegans Hypothetical
           protein T07C4.11 protein.
          Length = 367

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 419 SPSCRVSGIDACQSSWQFCTSGAIFLEPFVF 327
           SPSC    +  C  S  FC+  + F+E   F
Sbjct: 330 SPSCHPHILSICSCSTTFCSKCSAFIEQLEF 360


>U52002-7|AAB37730.3|  715|Caenorhabditis elegans Heparan
           sulphotransferase protein 1 protein.
          Length = 715

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 217 RPCPQXHRGTXKGSSLWLW*EKR 285
           +P  Q  R   KGSSLW+W  +R
Sbjct: 27  KPNDQLKRIKIKGSSLWMWQNQR 49


>L29440-1|AAA98752.1|  570|Caenorhabditis elegans endoprotease
           protein.
          Length = 570

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 193 ETCSSPLPRPCPQXHRGTXKGS 258
           ETC++P P  C +  +G  KGS
Sbjct: 442 ETCTAPGPMSCEKCSKGYGKGS 463


>AF039719-1|AAB96754.1|  942|Caenorhabditis elegans Blistered
           cuticle protein 4, isoformd protein.
          Length = 942

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 193 ETCSSPLPRPCPQXHRGTXKGS 258
           ETC++P P  C +  +G  KGS
Sbjct: 814 ETCTAPGPMSCEKCSKGYGKGS 835


>AB038044-1|BAB62394.1|  852|Caenorhabditis elegans
           N-deacetylase/N-sulfotransferase protein.
          Length = 852

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 217 RPCPQXHRGTXKGSSLWLW*EKR 285
           +P  Q  R   KGSSLW+W  +R
Sbjct: 164 KPNDQLKRIKIKGSSLWMWQNQR 186


>AB037943-1|BAB61758.1|  696|Caenorhabditis elegans
           N-deacetylase/N-sulfotransferase protein.
          Length = 696

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 217 RPCPQXHRGTXKGSSLWLW*EKR 285
           +P  Q  R   KGSSLW+W  +R
Sbjct: 8   KPNDQLKRIKIKGSSLWMWQNQR 30


>AB037942-1|BAB61757.1|  814|Caenorhabditis elegans
           N-deacetylase/N-sulfotransferase protein.
          Length = 814

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 217 RPCPQXHRGTXKGSSLWLW*EKR 285
           +P  Q  R   KGSSLW+W  +R
Sbjct: 126 KPNDQLKRIKIKGSSLWMWQNQR 148


>AB037941-1|BAB61756.1|  826|Caenorhabditis elegans
           N-deactylase/N-sulfotransferase protein.
          Length = 826

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 217 RPCPQXHRGTXKGSSLWLW*EKR 285
           +P  Q  R   KGSSLW+W  +R
Sbjct: 138 KPNDQLKRIKIKGSSLWMWQNQR 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,922,231
Number of Sequences: 27780
Number of extensions: 250649
Number of successful extensions: 646
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)