Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4o04
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    29   0.63 
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    27   3.4  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   5.9  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    26   5.9  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   7.8  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   7.8  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   7.8  

>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 635  IWNMCCRSHYYISTIFSKQ 579
            +W   CRSHY+IS + S Q
Sbjct: 1003 VWYRECRSHYFISPVLSNQ 1021


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/60 (21%), Positives = 26/60 (43%)
 Frame = +3

Query: 111 CTEKIVPRKIKPQNIVIRLMEREIHGSRKPGSHFHVVREFYQNVFPNLTIVNVEKPPCFL 290
           CT +++   I+P  I I L    +  +R      +   ++Y   F     ++ + PPC +
Sbjct: 433 CTRRLLAVIIEPSIIYICLKNSAVQSNRNVSPSANHNEQWYLVRFTTSATISQDSPPCIV 492


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 28/102 (27%), Positives = 44/102 (43%)
 Frame = -3

Query: 572 FSVELLLHHRHVTKTIRSDISLLTNIHCKLRLKESIKYMCSNSVMSISICIKQVSWITSH 393
           F + L  HH  V  T ++   L+ +I    +LKE ++    N  MS S    Q + +T+ 
Sbjct: 455 FFLNLAFHHYGVNATFKALEQLVQSIRDSEKLKERLETEQQN--MSGSF---QATRLTAQ 509

Query: 392 *VSCTRSTSVFIDLQRSLIS*ECYEMFTIWTKLPQKARRFLN 267
                      +DL RS +   CYE+    T    ++  FLN
Sbjct: 510 ----LSRLDQRLDLDRSFV--HCYEIMLTQTSDTSRSFSFLN 545


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +3

Query: 297 FSPDGKHFIAFSADQTSLEIYEYRGASS 380
           FSPDGK+ ++ S D T ++++E +  S+
Sbjct: 466 FSPDGKYLVSGSLDNT-IKLWELQCVSN 492


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 225 EFYQNVFPNLTIVNVEKPPCFLRKFSPDGKHFI 323
           E Y ++F  L+ +    PP     FSP+ + F+
Sbjct: 524 ESYTSIFAQLSAICDGDPPSLPDSFSPEARDFV 556


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = +3

Query: 225 EFYQNVFPNLTIVNVEKPPC--FLRKFSPDGKHFIAFSADQTSLEIYEYRGASSAGDLVA 398
           +F QN+F + T+     PPC   L +++   KH I       S  I        A D V 
Sbjct: 337 KFVQNLFVSNTVPVPPLPPCIPLLVQYTQLPKHQIEVYESDVSEYIANEFSMDFASDTVR 396

Query: 399 GYPTDLLNA 425
           G    +L+A
Sbjct: 397 GAAISVLSA 405


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 282 CFLRKFSPDGKHFIAFSADQT 344
           CF  KFS DG++  + S D+T
Sbjct: 197 CFDLKFSSDGRYLCSVSEDRT 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,982
Number of Sequences: 5004
Number of extensions: 61676
Number of successful extensions: 190
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)