Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4o04
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0032 - 247971-248107,248369-248468,248861-248959,249617-24...    57   1e-08
03_05_0969 + 29283905-29284570,29284862-29284930,29286533-292866...    30   1.5  
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218...    29   2.6  
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783...    29   4.6  
07_03_1101 + 23967298-23967366,23968918-23969021,23969616-239697...    28   6.1  
07_03_0733 + 21062790-21063639,21063674-21063721,21065428-210654...    28   6.1  
04_03_0118 - 11474060-11475298                                         28   8.0  

>01_01_0032 -
           247971-248107,248369-248468,248861-248959,249617-249781,
           249860-249940,250316-250384,250695-250790,252232-252282,
           253361-253419,254255-254324,254325-254553,254674-255098,
           255361-255441
          Length = 553

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 25/70 (35%), Positives = 43/70 (61%)
 Frame = +3

Query: 150 NIVIRLMEREIHGSRKPGSHFHVVREFYQNVFPNLTIVNVEKPPCFLRKFSPDGKHFIAF 329
           N+  R+ +R+    R PG+  + VR+FY+N+ P+ TI +++ P    RKF+ DG + +AF
Sbjct: 9   NLASRVFDRQFLSPR-PGATVNTVRQFYENLVPSYTICDIDCPDYSFRKFTDDGNYLVAF 67

Query: 330 SADQTSLEIY 359
           S +   L +Y
Sbjct: 68  SRNHQDLIVY 77


>03_05_0969 +
           29283905-29284570,29284862-29284930,29286533-29286631,
           29287016-29287324
          Length = 380

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 255 TIVNVEKPPCFLRKFSPDGKHFIAFSAD 338
           T+++ E PP    KFSP+GK  +A + D
Sbjct: 192 TLIDDESPPVSFAKFSPNGKFVLAATLD 219


>03_06_0003 +
           30921197-30921388,30921514-30921632,30921742-30921811,
           30922078-30922161,30922258-30922344,30922431-30922501,
           30922648-30922702,30923374-30923509,30925009-30925103,
           30925203-30925357,30925435-30925543,30925761-30925817,
           30925913-30926027,30926177-30926264,30926738-30927501,
           30927600-30927688,30928315-30928422,30928550-30928657,
           30928887-30928977,30929235-30929287,30929557-30929712,
           30930763-30930825,30931491-30931535,30932075-30932130,
           30933051-30933132,30933238-30933354,30933428-30933530,
           30933912-30934062,30934180-30934417,30934564-30934764,
           30934850-30934935,30935036-30935135
          Length = 1347

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +3

Query: 294 KFSPDGKHFIAFSADQTSLEIYE 362
           KFSPDGK+F + S D TS++ +E
Sbjct: 134 KFSPDGKYFASGSGD-TSIKFFE 155


>04_04_1197 +
           31672019-31672325,31672431-31672740,31673334-31678335,
           31678677-31678715
          Length = 1885

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 125 CTSKNKTSKYRHKINGKRNTRVTET 199
           CTSKN TS  R+ +N  +  RVT T
Sbjct: 174 CTSKNGTSALRNHLNVCKRKRVTST 198


>07_03_1101 +
           23967298-23967366,23968918-23969021,23969616-23969716,
           23969792-23969858,23969910-23970045,23970470-23970583,
           23970649-23970786,23970865-23970949,23971029-23971075,
           23971216-23971351,23971396-23971436
          Length = 345

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +3

Query: 213 HVVREFYQNVFPNLTIVNVEKPPCFLRKFSPDGKHFIAFSAD 338
           HV+  F+ N      +  V         FSPDG H I+ S D
Sbjct: 234 HVLDSFHGNNIATYNVKPVVSNSTLEASFSPDGNHIISGSGD 275


>07_03_0733 +
           21062790-21063639,21063674-21063721,21065428-21065478,
           21065559-21065695,21065781-21065997,21066390-21066627,
           21066720-21066870,21066990-21067334
          Length = 678

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +3

Query: 279 PCFLRKFSPDGKHFIAFSADQTSLEIYEYRGASSAGDLVAGYPTDLLNADAD 434
           PC+LR FS  G++F+A   D  +    + R  ++  ++       LLNA AD
Sbjct: 119 PCYLR-FS--GRNFLAADGDNFAAYFSKVRNVTAPAEVFDAAVVALLNATAD 167


>04_03_0118 - 11474060-11475298
          Length = 412

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = +2

Query: 95  RKGILLHRKNCT-----SKNKTSKYRHKINGKRNTRVTETWIAFSR 217
           RK   + RK+CT      ++    Y H  +G RN   T TW+ +SR
Sbjct: 304 RKYHAIFRKHCTPSCYPDEHYIPTYLHLRHGARNANRTVTWVDWSR 349


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,943,339
Number of Sequences: 37544
Number of extensions: 363283
Number of successful extensions: 964
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)