Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4o04
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37139-8|CAA85487.1|  376|Caenorhabditis elegans Hypothetical pr...    35   0.063
Z78544-3|CAB01760.1|  395|Caenorhabditis elegans Hypothetical pr...    33   0.19 
L13200-2|ABE73330.1|  810|Caenorhabditis elegans Hypothetical pr...    31   0.78 
L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical pr...    31   0.78 
Z66513-10|CAH19084.1|  488|Caenorhabditis elegans Hypothetical p...    29   3.1  
Z66513-9|CAH19083.1|  561|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z66513-8|CAA91340.2|  563|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z82259-2|CAB05129.1|  474|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AC024796-9|AAK29893.2|  454|Caenorhabditis elegans Hypothetical ...    28   5.5  
U88173-10|AAK21389.3|  390|Caenorhabditis elegans Hypothetical p...    27   9.6  
AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical...    27   9.6  

>Z37139-8|CAA85487.1|  376|Caenorhabditis elegans Hypothetical
           protein C14B1.4 protein.
          Length = 376

 Score = 34.7 bits (76), Expect = 0.063
 Identities = 15/37 (40%), Positives = 26/37 (70%)
 Frame = +3

Query: 255 TIVNVEKPPCFLRKFSPDGKHFIAFSADQTSLEIYEY 365
           T+V+ E PP    KFSP+GK+ +A + D T L+++++
Sbjct: 250 TLVDDENPPVAFVKFSPNGKYILASNLDST-LKLWDF 285


>Z78544-3|CAB01760.1|  395|Caenorhabditis elegans Hypothetical
           protein K04G11.4 protein.
          Length = 395

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 14/38 (36%), Positives = 27/38 (71%)
 Frame = +3

Query: 255 TIVNVEKPPCFLRKFSPDGKHFIAFSADQTSLEIYEYR 368
           T+++ E PP    KFSP+GK+ +A + + T L++++Y+
Sbjct: 269 TLIDEEHPPITHVKFSPNGKYILASNLNNT-LKLWDYQ 305


>L13200-2|ABE73330.1|  810|Caenorhabditis elegans Hypothetical
           protein ZK1236.3b protein.
          Length = 810

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = +3

Query: 33  MASGSSSKFIYYEDPPPGAIDEKEFFCTEKIVPRKIKPQNIVIRLMEREIHG-SRKPGSH 209
           +A GS +  I Y D PPG  +     C +  V  K++ +N+      R + G +RKP S 
Sbjct: 316 VARGSRTNMISYHDLPPGTGNAPPMACPQ--VTLKLE-KNVPFEAKIRAVAGYTRKPISE 372

Query: 210 FHVVR-EFYQNVFPNLTIVNVEK 275
              +R    +++F ++ I +V++
Sbjct: 373 VQKMRPSDLESIFHSICIASVQR 395


>L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical
           protein ZK1236.3a protein.
          Length = 1000

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = +3

Query: 33  MASGSSSKFIYYEDPPPGAIDEKEFFCTEKIVPRKIKPQNIVIRLMEREIHG-SRKPGSH 209
           +A GS +  I Y D PPG  +     C +  V  K++ +N+      R + G +RKP S 
Sbjct: 506 VARGSRTNMISYHDLPPGTGNAPPMACPQ--VTLKLE-KNVPFEAKIRAVAGYTRKPISE 562

Query: 210 FHVVR-EFYQNVFPNLTIVNVEK 275
              +R    +++F ++ I +V++
Sbjct: 563 VQKMRPSDLESIFHSICIASVQR 585


>Z66513-10|CAH19084.1|  488|Caenorhabditis elegans Hypothetical
           protein F54D5.15b protein.
          Length = 488

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/62 (22%), Positives = 33/62 (53%)
 Frame = +3

Query: 84  GAIDEKEFFCTEKIVPRKIKPQNIVIRLMEREIHGSRKPGSHFHVVREFYQNVFPNLTIV 263
           GA   ++  C+  I P  + P++  ++L +  ++ + +P +++H    + Q   PNL+ V
Sbjct: 247 GANSRRDSMCSLSIAP-PLPPKSDAMQLRQATVNHASRPPTNYHQNGGYGQQYEPNLSSV 305

Query: 264 NV 269
            +
Sbjct: 306 PI 307


>Z66513-9|CAH19083.1|  561|Caenorhabditis elegans Hypothetical
           protein F54D5.15c protein.
          Length = 561

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/62 (22%), Positives = 33/62 (53%)
 Frame = +3

Query: 84  GAIDEKEFFCTEKIVPRKIKPQNIVIRLMEREIHGSRKPGSHFHVVREFYQNVFPNLTIV 263
           GA   ++  C+  I P  + P++  ++L +  ++ + +P +++H    + Q   PNL+ V
Sbjct: 320 GANSRRDSMCSLSIAP-PLPPKSDAMQLRQATVNHASRPPTNYHQNGGYGQQYEPNLSSV 378

Query: 264 NV 269
            +
Sbjct: 379 PI 380


>Z66513-8|CAA91340.2|  563|Caenorhabditis elegans Hypothetical
           protein F54D5.15a protein.
          Length = 563

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/62 (22%), Positives = 33/62 (53%)
 Frame = +3

Query: 84  GAIDEKEFFCTEKIVPRKIKPQNIVIRLMEREIHGSRKPGSHFHVVREFYQNVFPNLTIV 263
           GA   ++  C+  I P  + P++  ++L +  ++ + +P +++H    + Q   PNL+ V
Sbjct: 322 GANSRRDSMCSLSIAP-PLPPKSDAMQLRQATVNHASRPPTNYHQNGGYGQQYEPNLSSV 380

Query: 264 NV 269
            +
Sbjct: 381 PI 382


>Z82259-2|CAB05129.1|  474|Caenorhabditis elegans Hypothetical
           protein C28D4.2 protein.
          Length = 474

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 4/125 (3%)
 Frame = +3

Query: 102 EFFCTEKIVPRKIKPQNIVIRLMEREIHGSRKPGSHFHVVREFYQNVFP--NLTIVNVEK 275
           E + T+  VP+   P  I +  +ERE++       H H    F  N     N  +++  K
Sbjct: 250 EMYLTQAKVPKSDYPSTITVAQLERELNFVEFFLQHSHSPVVFSHNDLQEGNFLLIDGYK 309

Query: 276 PPCFLRKFSPDGKHFIAFSADQTSLEI--YEYRGASSAGDLVAGYPTDLLNADADAHHRI 449
                   +PDGK            E   Y YRG    G+    Y  D   A+A  +++I
Sbjct: 310 LADDGTVLTPDGKPTNDDPLSLIDFEYCSYNYRG-FDLGNHFCEYGYDYNEAEA-PYYKI 367

Query: 450 RTHIF 464
             H F
Sbjct: 368 HQHYF 372


>AC024796-9|AAK29893.2|  454|Caenorhabditis elegans Hypothetical
           protein Y48G1C.1 protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/67 (28%), Positives = 28/67 (41%)
 Frame = +3

Query: 42  GSSSKFIYYEDPPPGAIDEKEFFCTEKIVPRKIKPQNIVIRLMEREIHGSRKPGSHFHVV 221
           G  SK +   +PP   + E      +K  P   + + +  +  E  +  SRK   HF V 
Sbjct: 10  GPQSKQMLPPEPPRIILREVPVQNNQKEHPPVQEIKTVSSKSKEHRVSSSRKIPDHFDVG 69

Query: 222 REFYQNV 242
             FY NV
Sbjct: 70  PRFYMNV 76


>U88173-10|AAK21389.3|  390|Caenorhabditis elegans Hypothetical
           protein F46F11.10 protein.
          Length = 390

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +3

Query: 117 EKIVPRKIKPQNIVIRLMEREIHGSRKPGSHFHVVREFYQ-NVFPNLTIVNVEKPPCFLR 293
           EK+  RKI  QN+  R+    +H        ++ ++  Y+  +  N  I+ V+    FL 
Sbjct: 119 EKVNFRKISEQNVGSRVPSYMLHFPNSVSEEYYQMKRLYEAYLLENRPILAVDCQ--FLS 176

Query: 294 KFSPDGKHFIA 326
           + SP G+   A
Sbjct: 177 RLSPRGRGLTA 187


>AC024817-40|AAF59577.4|  967|Caenorhabditis elegans Hypothetical
            protein Y54G2A.21 protein.
          Length = 967

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +3

Query: 120  KIVPRKIKPQNIVIRLMEREIHGSR-KPGSHFHVVREFY-QNVFPNLTIVNVEKPPCFLR 293
            +I  + ++  + +   +ER     R K   + HV+RE   +N+  ++T +N   P   + 
Sbjct: 788  RITEQGVESVHAIFNALERRFCNYRDKKRRYIHVLRELMCRNIMNDMT-MNTSIPGLSIP 846

Query: 294  KFSPDGKHFIAFSADQTSL 350
             FS + +  IAF  + T +
Sbjct: 847  DFSQNVQTSIAFGGNSTKI 865


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,157,712
Number of Sequences: 27780
Number of extensions: 353358
Number of successful extensions: 952
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)