Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt4o02
(584 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81049-2|CAB02847.2| 576|Caenorhabditis elegans Hypothetical pr... 29 2.4
AB030946-1|BAA90483.1| 576|Caenorhabditis elegans high-affinity... 29 2.4
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 28 5.6
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 28 5.6
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 27 7.4
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 27 7.4
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 27 9.8
Z46996-3|CAA87100.2| 331|Caenorhabditis elegans Hypothetical pr... 27 9.8
U52002-9|AAB37727.2| 839|Caenorhabditis elegans Human dice1 (de... 27 9.8
U52002-8|AAU05577.1| 842|Caenorhabditis elegans Human dice1 (de... 27 9.8
>Z81049-2|CAB02847.2| 576|Caenorhabditis elegans Hypothetical
protein C48D1.3 protein.
Length = 576
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 197 VYQVLICIVYLVRSYCDLRIMGFFTALIVNIVGGAVL 307
++ L+C+VY+ RS + G+ L++ ++GG L
Sbjct: 419 LFPQLLCVVYMPRSNTYGSLAGYAVGLVLRLIGGEPL 455
>AB030946-1|BAA90483.1| 576|Caenorhabditis elegans high-affinity
choline transporterCHO-1 protein.
Length = 576
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 197 VYQVLICIVYLVRSYCDLRIMGFFTALIVNIVGGAVL 307
++ L+C+VY+ RS + G+ L++ ++GG L
Sbjct: 419 LFPQLLCVVYMPRSNTYGSLAGYAVGLVLRLIGGEPL 455
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
F40E10.4 protein.
Length = 1410
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/50 (24%), Positives = 22/50 (44%)
Frame = +1
Query: 376 GKHCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSSI 525
G+HC + + R+H+I+ +CR D NCC+++
Sbjct: 1322 GEHCDEKRIKCDKQKFRRHHIENECRSVDRIKIAECNGYCGGEQNCCTAV 1371
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/50 (24%), Positives = 22/50 (44%)
Frame = +1
Query: 376 GKHCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSSI 525
G+HC + + R+H+I+ +CR D NCC+++
Sbjct: 1322 GEHCDEKRIKCDKQKFRRHHIENECRSVDRIKIAECNGYCGGEQNCCTAV 1371
>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +1
Query: 382 HCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSSIHS 531
+CS +P V E + K H S N+ ++ +DNCC+ ++
Sbjct: 770 NCSNNPNVCSENTNLTQFQKYHPNTHVSLNNHSNFAQNCPSDNCCTETNA 819
>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +1
Query: 382 HCSFSPVVLREFNGRKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSSIHS 531
+CS +P V E + K H S N+ ++ +DNCC+ ++
Sbjct: 770 NCSNNPNVCSENTNLTQFQKYHPNTHVSLNNHSNFAQNCPSDNCCTETNA 819
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = -3
Query: 444 NFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQR 304
NF IM P +++ + W+ + ++ L+ +RG T + + P++R
Sbjct: 465 NFHIMAPTLEYNTHPWSWSPCSAGMLERFLENNRGQTQCLFDQPVER 511
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = -3
Query: 444 NFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQR 304
NF IM P +++ + W+ + ++ L+ +RG T + + P++R
Sbjct: 465 NFHIMAPTLEYNTHPWSWSPCSAGMLERFLENNRGQTQCLFDQPVER 511
>Z46996-3|CAA87100.2| 331|Caenorhabditis elegans Hypothetical
protein C34C12.3 protein.
Length = 331
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 245 HSNFSPDIQYKLTLDKLYLFIDQQFVDNSGAQCSVL 138
H SPDI+ T+D L L Q V N G C ++
Sbjct: 189 HGGLSPDIR---TIDSLMLLDRAQEVPNKGPLCDIM 221
>U52002-9|AAB37727.2| 839|Caenorhabditis elegans Human dice1
(deleted in cancer)homolog protein 1, isoform a protein.
Length = 839
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +1
Query: 319 VFDPNRGTSARLQRIGNNGGKH----CSFSPVVLREFNGRKHYIK 441
+FDPN+ T + ++G + C F P+ L RK YI+
Sbjct: 578 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 622
>U52002-8|AAU05577.1| 842|Caenorhabditis elegans Human dice1
(deleted in cancer)homolog protein 1, isoform b protein.
Length = 842
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +1
Query: 319 VFDPNRGTSARLQRIGNNGGKH----CSFSPVVLREFNGRKHYIK 441
+FDPN+ T + ++G + C F P+ L RK YI+
Sbjct: 581 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 625
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,801,696
Number of Sequences: 27780
Number of extensions: 230022
Number of successful extensions: 465
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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