Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt4n24
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha...    25   4.8  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    25   4.8  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    25   6.4  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   6.4  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    24   8.5  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    24   8.5  

>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 222 PVWIQKKTGAYKVPEYF-CYDNVSFFE 299
           PVWI ++ G Y +PEY       SFFE
Sbjct: 19  PVWIMRQAGRY-LPEYHKLRAKQSFFE 44


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 90  VAMRSVLLFSTPNLFILLHNRIIA 19
           VA    L F+TP+L+ L H  ++A
Sbjct: 96  VASADALFFATPHLYKLAHEPLVA 119


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 173 NGLSSAVIHPASQPVGPGVDPKKNRSVQSSR 265
           N  SS   HP + P GP   P  N +  + R
Sbjct: 208 NVKSSPSQHPVNPPTGPACSPAYNNTFDAFR 238


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 225 VWIQKKTGAYKVPEYFCYDNVSFFEAEIEMAK 320
           +W   +T A  + + F  D++SF +AE E+ +
Sbjct: 612 LWFTLRTHASHIWQNFTADDISFLKAEEEVGE 643


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +3

Query: 177  D*VAPSFIQLHNLWAPVWIQKKTGAYKVPEYFCYDNVSFFEAEIEM 314
            D +  SFI   N W  + +   +G  K P   C   V   +A +++
Sbjct: 1230 DILQESFINTANAWINMLLLSASGPIKTPVGACATAVESVDAAVDL 1275


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 116 VWSLHCKTELQCGAYCSSAPQIYSFYYTIES 24
           VW+    +E+Q    C+    I  FY T E+
Sbjct: 53  VWARRMASEIQLHKLCNGHKNIIHFYNTAEN 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,810,053
Number of Sequences: 5004
Number of extensions: 36054
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)